CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BUCAI (Lipoyl synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lipA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.588e-13
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC V   R            +++ I   G++YVVITSV RDDL D G+ HF   ++ +K  K  + IE LVPDFRG
Sbjct:   82 ATFMILGSICTRNCPFCAVFHGRPNPVNVEEPQ-KLSDTIFDMGINYVVITSVVRDDLYDGGAEHFVNCIKAIKN-KNQVKIEILVPDFRG 170          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BUCA5 (Lipoyl synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=lipA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.588e-13
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC V   R            +++ I   G++YVVITSV RDDL D G+ HF   ++ +K  K  + IE LVPDFRG
Sbjct:   82 ATFMILGSICTRNCPFCAVFHGRPNPVNVEEPQ-KLSDTIFDMGINYVVITSVVRDDLYDGGAEHFVNCIKAIKN-KNQVKIEILVPDFRG 170          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEPIN (Lipoyl synthase OS=Leptospira interrogans GN=lipA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.686e-13
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFR 270
            AT M+ GD CTR C +C+V + +            +AE+  +  L +VVITSV+RDDL D G+ HFA+TV+++++  P+  IE L+PD +
Sbjct:   70 ATYMLGGDICTRRCSYCDVASGKPFPLDPEEPK-RIAESSIALDLRHVVITSVNRDDLEDGGAAHFAKTVKEIRKGLPDCKIELLIPDLK 158          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACSU (Lipoyl synthase OS=Bacillus subtilis GN=lipA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.686e-13
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR CRFC VKT              VA+++A   L + VIT+V RDD  D G+G FA+TVR ++   P   IE L  D  G
Sbjct:   58 ATFMILGSVCTRACRFCAVKTG-LPTELDLQEPERVADSVALMNLKHAVITAVARDDQKDGGAGIFAETVRAIRRKSPFTTIEVLPSDMGG 147          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACP2 (Lipoyl synthase OS=Bacillus pumilus (strain SAFR-032) GN=lipA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.686e-13
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR CRFC VKT              VA+++A   L + VIT+V RDD  D G+G FA+TVR ++   P   IE L  D  G
Sbjct:   58 ATFMILGSVCTRACRFCAVKTG-LPTELDLQEPERVADSVALMNLKHAVITAVARDDQKDGGAGVFAETVRAIRRKSPFTTIEVLPSDMGG 147          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_BACA2 (Lipoyl synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=lipA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.686e-13
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR CRFC VKT              VA+++A   L + VIT+V RDD  D G+G FA+TVR ++   P   IE L  D  G
Sbjct:   58 ATFMILGSVCTRACRFCAVKTG-LPTELDLQEPERVADSVALMNLKHAVITAVARDDQKDGGAGVFAETVRAIRRKSPFTTIEVLPSDMGG 147          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_LEIXX (Lipoyl synthase OS=Leifsonia xyli subsp. xyli GN=lipA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.120e-13
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I G  CTR C FC + T +            VAE++A  GL Y  +T V RDDL D+G+  +A+T+R++    P   +E LVPDF G
Sbjct:   72 ATFLIGGSQCTRRCDFCQIDTGKPAEFDRDEPR-RVAESVARMGLRYSTVTGVARDDLEDEGAWLYAETIREIHRQSPGTGVEILVPDFSG 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_GEOSF (Lipoyl synthase OS=Geobacter sp. (strain FRC-32) GN=lipA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.120e-13
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +ILG  CTR C FCNV T +            VA A+    L +VV+TS  RDDLAD G+  +A TV  ++   P   IE LVPDF G
Sbjct:   52 ATFLILGKLCTRLCSFCNV-TKQTPLAVDQAEPERVAAAVELLKLTHVVVTSPTRDDLADGGAALYAATVAAIRNASPQTKIELLVPDFAG 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_COREF (Lipoyl synthase OS=Corynebacterium efficiens GN=lipA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.120e-13
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +I G  C+R C FC + ++R            VAE++    L+Y  IT V RDDL D+G+  +++ VRK+ EL PN  +E LVPDF G
Sbjct:   72 ATFLIGGANCSRRCDFCMINSARPEPLDRGEPL-RVAESVREMRLNYSTITGVTRDDLPDEGAWLYSEVVRKIHELNPNTGVENLVPDFSG 161          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_VESOH (Lipoyl synthase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=lipA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.993e-13
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+G  CTR C FC+V   +           ++A+ I    L YVVITSVDRDDL D G  HF   +  ++   P + IE L PDF+G
Sbjct:   79 ATFMIMGQICTRRCPFCDVAHGKPRTLDIDEPK-HLADTIKKMRLKYVVITSVDRDDLHDGGVQHFKMCIDNIRLSTPKVKIEILTPDFKG 168          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_BUCAI3.588e-1346.15Lipoyl synthase OS=Buchnera aphidicola subsp. Acyr... [more]
LIPA_BUCA53.588e-1346.15Lipoyl synthase OS=Buchnera aphidicola subsp. Acyr... [more]
LIPA_LEPIN4.686e-1341.11Lipoyl synthase OS=Leptospira interrogans GN=lipA ... [more]
LIPA_BACSU4.686e-1345.05Lipoyl synthase OS=Bacillus subtilis GN=lipA PE=3 ... [more]
LIPA_BACP24.686e-1345.05Lipoyl synthase OS=Bacillus pumilus (strain SAFR-0... [more]
LIPA_BACA24.686e-1345.05Lipoyl synthase OS=Bacillus amyloliquefaciens (str... [more]
LIPA_LEIXX6.120e-1340.66Lipoyl synthase OS=Leifsonia xyli subsp. xyli GN=l... [more]
LIPA_GEOSF6.120e-1345.05Lipoyl synthase OS=Geobacter sp. (strain FRC-32) G... [more]
LIPA_COREF6.120e-1341.76Lipoyl synthase OS=Corynebacterium efficiens GN=li... [more]
LIPA_VESOH7.993e-1342.86Lipoyl synthase OS=Vesicomyosocius okutanii subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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