CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOPT (Lipoyl synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 49/89 (55.06%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT              VAEA    GL ++VITSVDRDDLAD G+ HFA T+R ++E  P   IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTGMPGALDANEP-AYVAEATRKLGLQHLVITSVDRDDLADGGAAHFAATIRAVREACPTTTIEILTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOPS (Lipoyl synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=lipA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 49/89 (55.06%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT              VAEA    GL+++VITSVDRDDLAD G+ HFA T+R ++E  P   IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTG-LPGALDPNEPAYVAEATRKLGLEHLVITSVDRDDLADGGAAHFAATIRAVREHCPTTTIEILTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOPA (Lipoyl synthase OS=Rhodopseudomonas palustris GN=lipA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 49/89 (55.06%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT              VAEA    GL ++VITSVDRDDLAD G+ HFA T+R ++E  P   IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTGMPGALDANEP-AYVAEATRKLGLQHLVITSVDRDDLADGGAAHFAATIRAVREACPTTTIEILTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PARL1 (Lipoyl synthase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=lipA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MI+GDTCTR C FCNVKT             NVA A+A  GL +VVITSVDRDDLAD G+ HF + +  ++   P   IE L PDF
Sbjct:   78 ATMMIMGDTCTRACSFCNVKTG-LPAPLDVDEPENVANAVAKLGLRHVVITSVDRDDLADGGAAHFVEVIEAIRRRSPGTTIEILTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICTY (Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MILG  CTR CRFCNVKT R            +AEA+    L++VVITSVDRDDL D G+ HFA+ + +++   PN  IE L PDF
Sbjct:   54 ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPR-RLAEAVQKLNLNHVVITSVDRDDLEDGGASHFAECINEIRRSSPNTTIEILTPDF 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOSK (Lipoyl synthase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MI+G+ CTRGC FCNV T R            VA A++  GL +VV+TSVDRDDL D G+ HFAQT+R ++   P   IE LVPDF
Sbjct:   77 ATMMIMGEICTRGCSFCNVATGRPQALDAFEPG-RVAHAVSQLGLKHVVVTSVDRDDLEDGGAEHFAQTIRAIRHRAPATTIEVLVPDF 164          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOS4 (Lipoyl synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MI+G+ CTRGC FCNV T R            VA A++  GL +VV+TSVDRDDL D G+ HFAQT+R ++   P   IE LVPDF
Sbjct:   77 ATMMIMGEICTRGCSFCNVATGRPQALDAFEPG-RVAHAVSQLGLKHVVVTSVDRDDLEDGGAEHFAQTIRAIRHRAPATTIEVLVPDF 164          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOS1 (Lipoyl synthase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MI+G+ CTRGC FCNV T R            VA A++  GL +VV+TSVDRDDL D G+ HFAQT+R ++   P   IE LVPDF
Sbjct:   77 ATMMIMGEICTRGCSFCNVATGRPQALDAFEPG-RVAHAVSQLGLKHVVVTSVDRDDLEDGGAEHFAQTIRAIRHRAPATTIEVLVPDF 164          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA2_BRAJA (Lipoyl synthase 2 OS=Bradyrhizobium japonicum GN=lipA2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNV+T              VA+A+A  GL++VV+TSVDRDDLAD G+ HFA T+  ++ + P   IE L PDF
Sbjct:   84 ATFMIMGDTCTRACAFCNVRTGLPGPLDADEPG-KVADAVAKLGLEHVVVTSVDRDDLADGGAAHFAATIAAIRAMSPATSIEILTPDF 171          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_VEREI (Lipoyl synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=lipA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+A  +A+  L+YVVITSVDRDDL D GSGHF   ++ +++L P   IE LVPDFRG
Sbjct:   91 ATFMIMGDKCTRRCPFCDVGHGRPDPLDQDEPM-NLARTVAALALEYVVITSVDRDDLRDGGSGHFVDCIQSIRKLSPQTRIEILVPDFRG 180          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_RHOPT1.964e-1955.06Lipoyl synthase OS=Rhodopseudomonas palustris (str... [more]
LIPA_RHOPS1.964e-1955.06Lipoyl synthase OS=Rhodopseudomonas palustris (str... [more]
LIPA_RHOPA1.964e-1955.06Lipoyl synthase OS=Rhodopseudomonas palustris GN=l... [more]
LIPA_PARL11.964e-1952.81Lipoyl synthase OS=Parvibaculum lavamentivorans (s... [more]
LIPA_RICTY2.565e-1951.69Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 S... [more]
LIPA_RHOSK2.565e-1952.81Lipoyl synthase OS=Rhodobacter sphaeroides (strain... [more]
LIPA_RHOS42.565e-1952.81Lipoyl synthase OS=Rhodobacter sphaeroides (strain... [more]
LIPA_RHOS12.565e-1952.81Lipoyl synthase OS=Rhodobacter sphaeroides (strain... [more]
LIPA2_BRAJA2.565e-1951.69Lipoyl synthase 2 OS=Bradyrhizobium japonicum GN=l... [more]
LIPA_VEREI3.350e-1951.65Lipoyl synthase OS=Verminephrobacter eiseniae (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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