CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEFS (Lipoyl synthase OS=Pseudomonas fluorescens (strain SBW25) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R          + +A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L PN+++E LVPD+RG
Sbjct:  102 ATFMIMGDICTRRCPFCDVGHGRPKPLDVNEPES-LAIAIADLKLKYVVITSVDRDDLRDGGAQHFADCIREIRKLSPNVMLETLVPDYRG 191          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NITWN (Lipoyl synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 49/89 (55.06%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MI+GDTCTR C FCNVKT              VAEA    GL +VV+TSVDRDDL D G+ HFAQT+R ++E  P   IE L PDF
Sbjct:   78 ATFMIMGDTCTRACAFCNVKTGMPGAIESSEPEY-VAEATRKLGLAHVVVTSVDRDDLDDGGAEHFAQTIRAIRERCPATTIEILTPDF 165          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HAEIN (Lipoyl synthase OS=Haemophilus influenzae GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC+V   +            +AE I    L YVVITSVDRDDL D+G+GHF++ V+ ++EL PN+ IE LVPDFRG
Sbjct:   84 ATFMILGAICTRRCPFCDVAHGKPLPPDPEEPQ-KLAETIQDMKLKYVVITSVDRDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRG 173          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HAEIG (Lipoyl synthase OS=Haemophilus influenzae (strain PittGG) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC+V   +            +AE I    L YVVITSVDRDDL D+G+GHF++ V+ ++EL PN+ IE LVPDFRG
Sbjct:   84 ATFMILGAICTRRCPFCDVAHGKPLPPDPEEPQ-KLAETIQDMKLKYVVITSVDRDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRG 173          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HAEIE (Lipoyl synthase OS=Haemophilus influenzae (strain PittEE) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC+V   +            +AE I    L YVVITSVDRDDL D+G+GHF++ V+ ++EL PN+ IE LVPDFRG
Sbjct:   84 ATFMILGAICTRRCPFCDVAHGKPLPPDPEEPQ-KLAETIQDMKLKYVVITSVDRDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRG 173          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HAEI8 (Lipoyl synthase OS=Haemophilus influenzae (strain 86-028NP) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MILG  CTR C FC+V   +            +AE I    L YVVITSVDRDDL D+G+GHF++ V+ ++EL PN+ IE LVPDFRG
Sbjct:   84 ATFMILGAICTRRCPFCDVAHGKPLPPDPEEPQ-KLAETIQDMKLKYVVITSVDRDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRG 173          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ALHEH (Lipoyl synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR CRFC V T             + A+++   GL YVV+TSVDRDDL D G+GH+A  V  ++E+ P   +E L PDF G
Sbjct:   89 ATIMLMGAVCTRACRFCAVDTGNPKGRLDHDEPAHAADSVRLMGLSYVVLTSVDRDDLEDGGAGHYAACVNAIREVNPETAVEVLTPDFNG 179          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICFE (Lipoyl synthase OS=Rickettsia felis GN=lipA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT+MILG  CTR CRFCNVKT R            +AEA+    L +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF
Sbjct:   54 ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLNLKHVVITSVDRDDLDDGGATHFAECISEIRKSSPNTTIEILTPDF 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RHOCS (Lipoyl synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MILG  CTR C FCNV T R            VAEA+A   L+++V+TSVDRDDL D G+GHFA+T+R ++   P   IE L PDF
Sbjct:   71 ATFMILGAVCTRACAFCNVATGRPDQLDPHEPE-KVAEAVAHLKLEHIVVTSVDRDDLEDGGAGHFARTIRAIRAAAPGTTIEVLTPDF 158          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PYRCJ (Probable lipoyl synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT +ILGD CTR C+FC VKT              VAEA+A  GL YVVITSVDRDDL D G+  FA  V+ +K   P   +E L PDF G
Sbjct:   50 ATFLILGDVCTRACKFCAVKTGDPRGFVDPTEPARVAEAVAKLGLRYVVITSVDRDDLPDGGASQFASVVKAVKARAPWAKVEVLTPDFGG 140          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PSEFS7.464e-1951.65Lipoyl synthase OS=Pseudomonas fluorescens (strain... [more]
LIPA_NITWN7.464e-1955.06Lipoyl synthase OS=Nitrobacter winogradskyi (strai... [more]
LIPA_HAEIN7.464e-1952.75Lipoyl synthase OS=Haemophilus influenzae GN=lipA ... [more]
LIPA_HAEIG7.464e-1952.75Lipoyl synthase OS=Haemophilus influenzae (strain ... [more]
LIPA_HAEIE7.464e-1952.75Lipoyl synthase OS=Haemophilus influenzae (strain ... [more]
LIPA_HAEI87.464e-1952.75Lipoyl synthase OS=Haemophilus influenzae (strain ... [more]
LIPA_ALHEH7.464e-1946.15Lipoyl synthase OS=Alkalilimnicola ehrlichei (stra... [more]
LIPA_RICFE9.748e-1951.69Lipoyl synthase OS=Rickettsia felis GN=lipA PE=3 S... [more]
LIPA_RHOCS9.748e-1951.69Lipoyl synthase OS=Rhodospirillum centenum (strain... [more]
LIPA_PYRCJ9.748e-1951.65Probable lipoyl synthase OS=Pyrobaculum calidifont... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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