CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEMY (Lipoyl synthase OS=Pseudomonas mendocina (strain ymp) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            ATIM++G  CTR CRFC V T             N A+++    L Y+V+TSVDRDDL D G+ H+A  VR +KE  P +++EAL PDF G
Sbjct:   90 ATIMLMGSVCTRACRFCAVDTGNPNGWLDLEEPQNTAKSVELMALRYIVLTSVDRDDLEDGGASHYAACVRAIKENTPQVVVEALTPDFDG 180
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAE (Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG
Sbjct:   91 ATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRG 180
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAB (Lipoyl synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG
Sbjct:   91 ATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRG 180
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA8 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG
Sbjct:   91 ATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRG 180
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA7 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain PA7) GN=lipA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG
Sbjct:   91 ATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRG 180
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NEIMB (Lipoyl synthase OS=Neisseria meningitidis serogroup B GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG
Sbjct:   83 ATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPR-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NEIMA (Lipoyl synthase OS=Neisseria meningitidis serogroup A GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG
Sbjct:   83 ATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NEIM0 (Lipoyl synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG
Sbjct:   83 ATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPR-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NEIG2 (Lipoyl synthase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG
Sbjct:   83 ATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172
[Close]
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_NEIG1 (Lipoyl synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG
Sbjct:   83 ATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRG 172
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PSEMY9.748e-1947.25Lipoyl synthase OS=Pseudomonas mendocina (strain y... [more]
LIPA_PSEAE9.748e-1952.75Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA ... [more]
LIPA_PSEAB9.748e-1952.75Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PSEA89.748e-1952.75Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PSEA79.748e-1952.75Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_NEIMB9.748e-1951.65Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIMA9.748e-1951.65Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIM09.748e-1951.65Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIG29.748e-1951.65Lipoyl synthase OS=Neisseria gonorrhoeae (strain N... [more]
LIPA_NEIG19.748e-1951.65Lipoyl synthase OS=Neisseria gonorrhoeae (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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