CF504318

Overview
NameCF504318
Unique NameCF504318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_MARMM (Lipoyl synthase OS=Maricaulis maris (strain MCS10) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            AT MILGDTCTR C FCNVKT              VAEA+A  GL++VVITSVDRDDL D G+ HF   +  ++   P+  IE L PDF
Sbjct:   82 ATFMILGDTCTRACSFCNVKTG-LPAAVDTDEPRRVAEAVAQMGLNHVVITSVDRDDLDDGGAQHFVDVIEAIRAATPSTTIEILTPDF 169          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_HAEDU (Lipoyl synthase OS=Haemophilus ducreyi GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+G  CTR C FC+V   +            VAE +    L YVVITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG
Sbjct:   94 ATFMIMGAICTRRCPFCDVAHGKPLPLDPYEPR-KVAETVQDMKLKYVVITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRG 183          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ERYLH (Lipoyl synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT+MILGD CTR C FCNVKT             N A A A  GL ++VITSVDRDDL D G+G F + +  L+   P+  IE L PDFRG
Sbjct:   70 ATVMILGDVCTRACAFCNVKTGMPRIVDPMEPE-NTAIAAAKMGLQHIVITSVDRDDLPDGGAGQFVKVIEALRRETPDTTIEILTPDFRG 159          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_DEIRA (Lipoyl synthase OS=Deinococcus radiodurans GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT M++G  CTR CRFC V T             +VA+++    L YVV+TSVDRDDL D G+ HFA+TV+ +KE+ P   +EAL PDF G
Sbjct:   77 ATFMLMGHICTRACRFCAVDTGNPMGKLDLDEPRSVADSVRLMDLKYVVLTSVDRDDLPDGGAYHFAKTVKAIKEVNPQTRVEALTPDFGG 167          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ACTPJ (Lipoyl synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+G  CTR C FC+V   +            VAE +    L YVVITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG
Sbjct:   94 ATFMIMGAICTRRCPFCDVAHGKPLPLDLEEPR-KVAETVQDMKLKYVVITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRG 183          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ACTP7 (Lipoyl synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+G  CTR C FC+V   +            VAE +    L YVVITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG
Sbjct:   94 ATFMIMGAICTRRCPFCDVAHGKPLPLDPEEPR-KVAETVQDMKLKYVVITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRG 183          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_ACTP2 (Lipoyl synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lipA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG 273
            AT MI+G  CTR C FC+V   +            VAE +    L YVVITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG
Sbjct:   94 ATFMIMGAICTRRCPFCDVAHGKPLPLDPEEPR-KVAETVQDMKLKYVVITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRG 183          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICRS (Lipoyl synthase OS=Rickettsia rickettsii (strain Sheila Smith) GN=lipA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            T+MILG  CTR CRFCNVKT R            +AEA+    L +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF
Sbjct:   55 TVMILGSVCTRACRFCNVKTGRPDLLDPYEPQ-RLAEAVQKLNLKHVVITSVDRDDLEDGGASHFAECISEIRKSSPNTTIEILTPDF 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICRO (Lipoyl synthase OS=Rickettsia rickettsii (strain Iowa) GN=lipA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            T+MILG  CTR CRFCNVKT R            +AEA+    L +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF
Sbjct:   55 TVMILGSVCTRACRFCNVKTGRPDLLDPYEPQ-RLAEAVQKLNLKHVVITSVDRDDLEDGGASHFAECISEIRKSSPNTTIEILTPDF 141          
BLAST of CF504318 vs. ExPASy Swiss-Prot
Match: LIPA_RICPU (Lipoyl synthase OS=Rickettsia peacockii (strain Rustic) GN=lipA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.273e-18
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    4 TIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDF 267
            T+MILG  CTR CRFCNVKT R            +AEA+    L +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF
Sbjct:   55 TVMILGSVCTRACRFCNVKTGRPDLLDPYEPQ-RLAEAVQKLNLKHVVITSVDRDDLEDGGASHFAECISEIRKSSPNTTIEILTPDF 141          
The following BLAST results are available for this feature:
BLAST of CF504318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_MARMM9.748e-1952.81Lipoyl synthase OS=Maricaulis maris (strain MCS10)... [more]
LIPA_HAEDU9.748e-1952.75Lipoyl synthase OS=Haemophilus ducreyi GN=lipA PE=... [more]
LIPA_ERYLH9.748e-1951.65Lipoyl synthase OS=Erythrobacter litoralis (strain... [more]
LIPA_DEIRA9.748e-1948.35Lipoyl synthase OS=Deinococcus radiodurans GN=lipA... [more]
LIPA_ACTPJ9.748e-1952.75Lipoyl synthase OS=Actinobacillus pleuropneumoniae... [more]
LIPA_ACTP79.748e-1952.75Lipoyl synthase OS=Actinobacillus pleuropneumoniae... [more]
LIPA_ACTP29.748e-1952.75Lipoyl synthase OS=Actinobacillus pleuropneumoniae... [more]
LIPA_RICRS1.273e-1851.14Lipoyl synthase OS=Rickettsia rickettsii (strain S... [more]
LIPA_RICRO1.273e-1851.14Lipoyl synthase OS=Rickettsia rickettsii (strain I... [more]
LIPA_RICPU1.273e-1851.14Lipoyl synthase OS=Rickettsia peacockii (strain Ru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-807 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504318 ID=CF504318; Name=CF504318; organism=Citrus sinensis; type=EST; length=275bp
GCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTTGCAGGTTTTG
CAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCAGACGAGCCTA
CTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTATGTGGTGATT
ACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTGGGCATTTTGC
TCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATGCTTATTGAAG
CATTGGTTCCTGATTTTCGCGGAAA
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