CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.430e-52
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EAR+EL RML EDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDE 115

HSP 2 Score: 35.039 bits (79), Expect = 3.430e-52
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGLT +KLFSRLFAKKEM
Sbjct:    1 MGLTISKLFSRLFAKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 1.293e-51
Identity = 93/101 (92.08%), Postives = 97/101 (96.04%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDR+VEAR+EL RMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDE 115

HSP 2 Score: 28.8758 bits (63), Expect = 1.293e-51
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG+ F+KLF R++ KKEM
Sbjct:    1 MGMAFSKLFDRIWGKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 6.887e-50
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 3 
Query:   75 GSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            G   +K  RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDR+VEAR+EL RMLNEDE
Sbjct:   14 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDE 118

HSP 2 Score: 22.7126 bits (47), Expect = 6.887e-50
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 2 
Query:   56 FTKLFSRLFAKKEM 97
            F KLF  LF KKEM
Sbjct:    8 FGKLFDGLFGKKEM 21
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 6.888e-50
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 3 
Query:   75 GSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            G   +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+RI EAR+EL RML+EDE
Sbjct:   11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDE 115

HSP 2 Score: 25.409 bits (54), Expect = 6.888e-50
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL+ +KL + LF KKEM
Sbjct:    1 MGLSVSKLLNGLFGKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 1.525e-49
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE+KNI+FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EA DEL +MLNEDE
Sbjct:   15 KKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDE 115

HSP 2 Score: 30.0314 bits (66), Expect = 1.525e-49
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL F KLFSR F KK+M
Sbjct:    1 MGLAFGKLFSRFFGKKDM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.526e-49
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K+ RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EA +EL +ML EDE
Sbjct:   15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDE 115

HSP 2 Score: 30.4166 bits (67), Expect = 1.526e-49
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGLT + LFSRLF KK+M
Sbjct:    1 MGLTISSLFSRLFGKKQM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 1.989e-49
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 3 
Query:   72 AGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            A  L R+  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDRI EAR+EL  MLNEDE
Sbjct:   10 ASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDE 115

HSP 2 Score: 25.409 bits (54), Expect = 1.989e-49
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGLT +KLF+ L  ++EM
Sbjct:    1 MGLTISKLFASLLGRREM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.378e-49
Identity = 93/101 (92.08%), Postives = 97/101 (96.04%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RMLNEDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDE 115

HSP 2 Score: 23.483 bits (49), Expect = 3.378e-49
Identity = 11/18 (61.11%), Postives = 11/18 (61.11%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG   T L  RLF KKEM
Sbjct:    1 MGNLVTHLLDRLFGKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.378e-49
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDE 115

HSP 2 Score: 26.5646 bits (57), Expect = 3.378e-49
Identity = 12/18 (66.67%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG  F KLF  LF KKEM
Sbjct:    1 MGNVFEKLFKSLFGKKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.378e-49
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDE
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDE 115

HSP 2 Score: 26.5646 bits (57), Expect = 3.378e-49
Identity = 12/18 (66.67%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG  F KLF  LF KKEM
Sbjct:    1 MGNVFEKLFKSLFGKKEM 18
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_SOLTU3.430e-5292.08ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF_AJECA1.293e-5192.08ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF_NEUCR6.887e-5088.57ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF_CRYNE6.888e-5088.57ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF1_DICDI1.525e-4990.10ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF4_XENLA1.526e-4989.11ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF_CANAL1.989e-4988.68ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF_DUGJA3.378e-4992.08ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF2_RAT3.378e-4991.09ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE3.378e-4991.09ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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