CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            +K  +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDE 117          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 380
            +K  +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.328e-12
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   30 PQLEEWG*LSQSCSAGSLPRKRCR-ILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            P+ +EW    +     +L     R +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH++L++D
Sbjct:   55 PEWDEWDPEDEEDEEPALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKD 175          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.040e-12
Identity = 36/107 (33.64%), Postives = 63/107 (58.88%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRIVEARDELHRMLNE 383
            +++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+
Sbjct:   19 KVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQ 125          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   78 SLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 380
            SL  K   IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+
Sbjct:   30 SLFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLS 130          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 3
Query:   30 PQLEEWG*LSQSCSAGSLPRKRCRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNED 386
            PQ +EW    +         ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D
Sbjct:   55 PQWDEWEPEDEEDEPALEELEQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRD 174          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.488e-11
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 377
            K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++
Sbjct:   17 KNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLI 113          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1B_ARATH1.045e-1234.00GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1_TOBAC1.782e-1235.71GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
ARL10_HUMAN2.328e-1234.71ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
ARLX_DICDI3.040e-1233.64ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
SAR1_ENCCU1.509e-1136.63Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
ARL10_MOUSE5.733e-1130.83ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
ARL9_HUMAN7.488e-1135.05ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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