CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.319e-46
Identity = 84/101 (83.17%), Postives = 95/101 (94.06%), Query Frame = 3 
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+RI +AR+ LHRM+NE+E
Sbjct:   15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEE 115

HSP 2 Score: 25.0238 bits (53), Expect = 4.319e-46
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL  ++LF+RLF KK++
Sbjct:    1 MGLYVSRLFNRLFQKKDV 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 6.105e-45
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR RI EAR+ + RMLNEDE
Sbjct:   16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 115

HSP 2 Score: 26.1794 bits (56), Expect = 6.105e-45
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL  +KLFS LF  KEM
Sbjct:    1 MGLFASKLFSNLFGNKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 7.956e-45
Identity = 80/100 (80.00%), Postives = 92/100 (92.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR RI EAR+ + RMLNEDE
Sbjct:   16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDE 115

HSP 2 Score: 26.1794 bits (56), Expect = 7.956e-45
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 2 
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MGL  +KLFS LF  KEM
Sbjct:    1 MGLYASKLFSNLFGNKEM 18
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 9.689e-43
Identity = 78/103 (75.73%), Postives = 94/103 (91.26%), Query Frame = 3 
Query:   81 LPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            LP+ + RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++E
Sbjct:   13 LPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNE 115
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 111
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 111
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 111
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 111
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 111
[Close]
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.117e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDRE 111
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_PLAFO4.319e-4683.17ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_YEAST6.105e-4581.00ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST7.956e-4580.00ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF4_ARATH9.689e-4375.73Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF6_RAT2.386e-4179.00ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG2.386e-4179.00ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE2.386e-4179.00ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN2.386e-4179.00ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK2.386e-4179.00ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_DROME3.117e-4179.00ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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