CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 6.943e-41
Identity = 79/100 (79.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E
Sbjct:   12 KEMRILMRGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDRE 111          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.407e-41
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--RIVEARDELHRMLNEDE 389
            +K  RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD IRPLWRHY+QNT  LI+V+DS D +  RI +A++ELH +L EDE
Sbjct:   15 KKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDE 117          

HSP 2 Score: 23.0978 bits (48), Expect = 8.407e-41
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG   +K+F +LF+KKE+
Sbjct:    1 MGQGASKIFGKLFSKKEV 18          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.186e-39
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +RI EAR ELHR++++ E
Sbjct:   20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDRE 119          

HSP 2 Score: 23.8682 bits (50), Expect = 1.186e-39
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   56 FTKLFSRLFAKKEM 97
            F+K FSRLF+ KEM
Sbjct:    9 FSKPFSRLFSNKEM 22          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.311e-36
Identity = 66/101 (65.35%), Postives = 86/101 (85.15%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DE
Sbjct:   23 KKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 9.547e-36
Identity = 67/100 (67.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L EDE
Sbjct:   16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDE 115          

HSP 2 Score: 25.0238 bits (53), Expect = 9.547e-36
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKE 94
            MG+ FT++FS +F  KE
Sbjct:    1 MGILFTRMFSSVFGNKE 17          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.556e-35
Identity = 65/101 (64.36%), Postives = 86/101 (85.15%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K+ RILM+GLD AGK+T+LYKLKLG+IV+T+PTIGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L ++E
Sbjct:   23 KKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.749e-35
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L E+E
Sbjct:   16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEE 115          

HSP 2 Score: 25.0238 bits (53), Expect = 2.749e-35
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKE 94
            MG+ FT++FS +F  KE
Sbjct:    1 MGILFTRMFSSVFGNKE 17          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.826e-34
Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 3
Query:   87 RKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +K  RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DE
Sbjct:   23 KKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.295e-34
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   84 PRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            P+   R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E E
Sbjct:  401 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKE 502          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.295e-34
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   84 PRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            P+   R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E E
Sbjct:  401 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKE 502          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF6_XENLA6.943e-4179.00ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF_GIALA8.407e-4175.73ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF2_SCHPO1.186e-3976.00Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARFJ_DICDI2.311e-3665.35ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF3_ARATH9.547e-3667.00ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARFH_DICDI2.556e-3564.36ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF1_BRARP2.749e-3566.00ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFK_DICDI2.826e-3463.37ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARD1_MOUSE6.295e-3462.75GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN6.295e-3462.75GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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