CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.074e-33
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   75 GSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            G    +  RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  +R EL  ML EDE
Sbjct:   10 GLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDE 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 3
Query:   69 SAGSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            S+   P   CR LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVGGQ KIR LW++YF NT  L+FVVDS+D +RI EA++EL  +L E E
Sbjct:    9 SSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPE 115          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 140.584 bits (353), Expect = 2.392e-33
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   75 GSLPRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            G L  +  RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++DEL  ML E+E
Sbjct:   10 GLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEE 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.329e-33
Identity = 63/100 (63.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  +ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E
Sbjct:   16 KEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKE 115          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.329e-33
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 3
Query:   84 PRKRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            P+   R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E E
Sbjct:  381 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKE 482          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.210e-33
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +  RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+E
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 115          

HSP 2 Score: 21.557 bits (44), Expect = 9.210e-33
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG  F+ +FS LF  +EM
Sbjct:    1 MGGFFSSIFSSLFGTREM 18          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.210e-33
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +  RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+E
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 115          

HSP 2 Score: 21.557 bits (44), Expect = 9.210e-33
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG  F+ +FS LF  +EM
Sbjct:    1 MGGFFSSIFSSLFGTREM 18          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.210e-33
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +  RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+E
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 115          

HSP 2 Score: 21.557 bits (44), Expect = 9.210e-33
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG  F+ +FS LF  +EM
Sbjct:    1 MGGFFSSIFSSLFGTREM 18          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.210e-33
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            +  RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+E
Sbjct:   16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 115          

HSP 2 Score: 21.557 bits (44), Expect = 9.210e-33
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   44 MGLTFTKLFSRLFAKKEM 97
            MG  F+ +FS LF  +EM
Sbjct:    1 MGGFFSSIFSSLFGTREM 18          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 4.511e-32
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:   90 KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            K  RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+E
Sbjct:   17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL1_CAEEL1.074e-3363.81ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF11_CAEEL1.831e-3364.49ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL1_DROME2.392e-3363.81ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARF3_YEAST5.329e-3363.00ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARD1_RAT5.329e-3361.76GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL1_RAT9.210e-3365.00ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE9.210e-3365.00ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_HUMAN9.210e-3365.00ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN9.210e-3365.00ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_YEAST4.511e-3263.00ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
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