CF504319

Overview
NameCF504319
Unique NameCF504319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 49/96 (51.04%), Postives = 72/96 (75.00%), Query Frame = 3
Query:  102 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 374
            ++++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+
Sbjct:   24 VVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRI 119          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   60 QSCSAGSLPR-KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            Q+    SLP  +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E
Sbjct:    8 QTSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   60 QSCSAGSLPR-KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            Q+    SLP  +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E
Sbjct:    8 QTSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 54/116 (46.55%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   60 QSCSAGSLPR-KRCRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            Q+    SLP  +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E
Sbjct:    8 QTSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.713e-24
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  102 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E
Sbjct:   23 IVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISE 123          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++
Sbjct:   18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHED 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++
Sbjct:   18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHED 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML  ++
Sbjct:   18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML  ++
Sbjct:   18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114          
BLAST of CF504319 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   99 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDE 389
            ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML  ++
Sbjct:   18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114          
The following BLAST results are available for this feature:
BLAST of CF504319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL4D_HUMAN4.522e-2451.04ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL4A_RAT4.522e-2446.55ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE4.522e-2446.55ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_BOVIN4.522e-2446.55ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL4A_HUMAN7.713e-2449.50ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL5B_MOUSE1.007e-2349.48ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN1.007e-2349.48ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL5A_RAT1.718e-2349.48ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN1.718e-2349.48ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN1.718e-2349.48ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-808 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504319 ID=CF504319; Name=CF504319; organism=Citrus sinensis; type=EST; length=389bp
CCTCTCTCTCTCGCGTTCTCTGAAGTGATCCCCAGCTGGAAGAATGGGGC
TGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCCG
AATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACA
AGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAAT
GTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGG
TGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTC
AAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAA
GCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAG
back to top