CF504354 | Citrus Genome Database

Overview


Name	CF504354
Unique Name	CF504354
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	401

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.991e-39
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   22 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 110

HSP 2 Score: 25.409 bits (54), Expect = 1.991e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.381e-39
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRH TGEF  +Y  T+GVEVHPL+F T+CG IRF  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL R
Sbjct:   19 GKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVR 107

HSP 2 Score: 25.7942 bits (55), Expect = 3.381e-39
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 2

Query:   98 SFKLVIVGDGGT 133
            +FKLV+VGDGGT
Sbjct:    7 AFKLVLVGDGGT 18

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.403e-39
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   21 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 109

HSP 2 Score: 25.409 bits (54), Expect = 4.403e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   10 FKLVLVGDGGT 20

BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.403e-39
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 3

Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   21 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 109

HSP 2 Score: 25.409 bits (54), Expect = 4.403e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2

Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   10 FKLVLVGDGGT 20

The following BLAST results are available for this feature:

BLAST of CF504354 vs. ExPASy Swiss-Prot

BLAST of CF504354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55


Match Name	E-value	Identity	Description
RAN_PONAB	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Pongo abelii GN...	[more]
RAN_MOUSE	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Mus musculus GN...	[more]
RAN_MACFA	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Macaca fascicul...	[more]
RAN_HUMAN	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Homo sapiens GN...	[more]
RAN_CHICK	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Gallus gallus G...	[more]
RAN_CANFA	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Canis familiari...	[more]
RAN_BOVIN	1.991e-39	82.02	GTP-binding nuclear protein Ran OS=Bos taurus GN=R...	[more]
GSP1_YARLI	3.381e-39	78.65	GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l...	[more]
RAN_SALSA	4.403e-39	80.90	GTP-binding nuclear protein Ran OS=Salmo salar GN=...	[more]
RAN_DANRE	4.403e-39	80.90	GTP-binding nuclear protein Ran OS=Danio rerio GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-843 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504354 ID=CF504354; Name=CF504354; organism=Citrus sinensis; type=EST; length=401bp
ATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAA
CAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGC
TTCAAACTTGTAATTGTCGGCGATGGTGGCACCTGGGAAGACTACCTTTG
TGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATT
GGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACG
ATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAG
ATGGATACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACT
GCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAG
G