CF504354

Overview
NameCF504354
Unique NameCF504354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.403e-39
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL R
Sbjct:   21 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 109          

HSP 2 Score: 25.409 bits (54), Expect = 4.403e-39
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   10 FKLVLVGDGGT 20          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.738e-39
Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+I F  WDTAGQEK GGLRDGYYI GQC IIMFDVT+R+TYKNVP W RDL R
Sbjct:   21 GKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR 109          

HSP 2 Score: 29.261 bits (64), Expect = 9.738e-39
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 2
Query:   80 QTVDYPSFKLVIVGDGGT 133
            Q  + P+FKLV+VGDGGT
Sbjct:    3 QPQNVPTFKLVLVGDGGT 20          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.656e-38
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN GK +F  WDTAGQEKFGGLRDGYYI   CAIIMFDV++R+TYKNVP W+RD+ R
Sbjct:   21 GKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITR 109          

HSP 2 Score: 24.6386 bits (52), Expect = 3.656e-38
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   95 PSFKLVIVGDGG 130
            P +KL++VGDGG
Sbjct:    8 PQYKLILVGDGG 19          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.787e-37
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL R
Sbjct:   22 GKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVR 110          

HSP 2 Score: 25.409 bits (54), Expect = 1.787e-37
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  101 FKLVIVGDGGT 133
            FKLV+VGDGGT
Sbjct:   11 FKLVLVGDGGT 21          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.058e-37
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFV+RHLTGEFE +Y PT+GV VHPL F+TN GKI F  WDTAGQEKFGGLRDGYYI G CAIIMFDVT+R++YKNVP WH DL R
Sbjct:   18 GKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTR 106          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.951e-37
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL R
Sbjct:   22 GKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVR 110          

HSP 2 Score: 24.2534 bits (51), Expect = 3.951e-37
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  101 FKLVIVGDGGT 133
            FK+V+VGDGGT
Sbjct:   11 FKVVLVGDGGT 21          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.925e-29
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFV RH TGEFEK+Y  T GV V  +  +T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R
Sbjct:   23 GKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTR 111          

HSP 2 Score: 24.2534 bits (51), Expect = 1.925e-29
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:   74 NQQTVDYPSFKLVIVGDGG 130
            N+Q V    FKLV+VGDGG
Sbjct:    4 NKQNV-VAEFKLVLVGDGG 21          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.509e-29
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTT VKRHLTGEF+ +Y  T+GVEV  L F TN G  R   WDTAGQE++GGLRDGY++  QCAIIMFDV +  TY NV  WHRDL R
Sbjct:   22 GKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVR 110          

HSP 2 Score: 24.6386 bits (52), Expect = 2.509e-29
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  101 FKLVIVGDGGT 133
            FKL+++GDGGT
Sbjct:   11 FKLILIGDGGT 21          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.207e-29
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKTTFV RH TGEFEK+Y  T GV V  +   T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R
Sbjct:   23 GKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTR 111          

HSP 2 Score: 23.8682 bits (50), Expect = 7.207e-29
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:   74 NQQTVDYPSFKLVIVGDGG 130
            N+Q V    FKLV+VGDGG
Sbjct:    4 NKQDV-VAEFKLVLVGDGG 21          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.108e-24
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  129 APGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            A GKTTFV RH+TGEF K+Y  TIGVE+  L F+       N  ++     DTAGQEKFGGLRDGYY+     ++ FDVT R+TYKNV +W+RD+ R
Sbjct:   16 ATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLLFFDVTNRVTYKNVESWYRDVFR 112          

HSP 2 Score: 23.0978 bits (48), Expect = 2.108e-24
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   98 SFKLVIVGDGGT 133
            SFK+++VGDG T
Sbjct:    6 SFKVILVGDGAT 17          
The following BLAST results are available for this feature:
BLAST of CF504354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RAN_CARAU4.403e-3980.90GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
SPI1_SCHPO9.738e-3979.78GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_PLAFA3.656e-3878.65GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RANT_RAT1.787e-3777.53GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN_DICDI2.058e-3777.53GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RANT_MOUSE3.951e-3777.53GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN_TETTH1.925e-2965.17GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RANL_DROME2.509e-2965.17GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_TETPY7.207e-2965.17GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_GIALA2.108e-2454.64GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-843 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504354 ID=CF504354; Name=CF504354; organism=Citrus sinensis; type=EST; length=401bp
ATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAA
CAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGC
TTCAAACTTGTAATTGTCGGCGATGGTGGCACCTGGGAAGACTACCTTTG
TGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATT
GGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACG
ATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAG
ATGGATACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACT
GCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAG
G
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