CF504354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 4.403e-39 Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G I++ WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNVP WHRDL R Sbjct: 21 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 109 HSP 2 Score: 25.409 bits (54), Expect = 4.403e-39 Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2 Query: 101 FKLVIVGDGGT 133 FKLV+VGDGGT Sbjct: 10 FKLVLVGDGGT 20
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 9.738e-39 Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+I F WDTAGQEK GGLRDGYYI GQC IIMFDVT+R+TYKNVP W RDL R Sbjct: 21 GKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR 109 HSP 2 Score: 29.261 bits (64), Expect = 9.738e-39 Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 2 Query: 80 QTVDYPSFKLVIVGDGGT 133 Q + P+FKLV+VGDGGT Sbjct: 3 QPQNVPTFKLVLVGDGGT 20
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 3.656e-38 Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN GK +F WDTAGQEKFGGLRDGYYI CAIIMFDV++R+TYKNVP W+RD+ R Sbjct: 21 GKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITR 109 HSP 2 Score: 24.6386 bits (52), Expect = 3.656e-38 Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2 Query: 95 PSFKLVIVGDGG 130 P +KL++VGDGG Sbjct: 8 PQYKLILVGDGG 19
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.787e-37 Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTF+KRHLTGEFEK+Y T+GVEVH L F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNVP+WH+DL R Sbjct: 22 GKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVR 110 HSP 2 Score: 25.409 bits (54), Expect = 1.787e-37 Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2 Query: 101 FKLVIVGDGGT 133 FKLV+VGDGGT Sbjct: 11 FKLVLVGDGGT 21
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.058e-37 Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTFV+RHLTGEFE +Y PT+GV VHPL F+TN GKI F WDTAGQEKFGGLRDGYYI G CAIIMFDVT+R++YKNVP WH DL R Sbjct: 18 GKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTR 106
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.951e-37 Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTF+KRHLTGEFEK+Y T+GVEVH L F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNVP+WH+DL R Sbjct: 22 GKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVR 110 HSP 2 Score: 24.2534 bits (51), Expect = 3.951e-37 Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 2 Query: 101 FKLVIVGDGGT 133 FK+V+VGDGGT Sbjct: 11 FKVVLVGDGGT 21
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.925e-29 Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTFV RH TGEFEK+Y T GV V + +T G IRF WDTAGQEK GGLR+GYYI AI+MFDVT+R+TYKN+P WH+DL R Sbjct: 23 GKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTR 111 HSP 2 Score: 24.2534 bits (51), Expect = 1.925e-29 Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 74 NQQTVDYPSFKLVIVGDGG 130 N+Q V FKLV+VGDGG Sbjct: 4 NKQNV-VAEFKLVLVGDGG 21
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.509e-29 Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTT VKRHLTGEF+ +Y T+GVEV L F TN G R WDTAGQE++GGLRDGY++ QCAIIMFDV + TY NV WHRDL R Sbjct: 22 GKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVR 110 HSP 2 Score: 24.6386 bits (52), Expect = 2.509e-29 Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 2 Query: 101 FKLVIVGDGGT 133 FKL+++GDGGT Sbjct: 11 FKLILIGDGGT 21
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.207e-29 Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 3 Query: 135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 GKTTFV RH TGEFEK+Y T GV V + T G IRF WDTAGQEK GGLR+GYYI AI+MFDVT+R+TYKN+P WH+DL R Sbjct: 23 GKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTR 111 HSP 2 Score: 23.8682 bits (50), Expect = 7.207e-29 Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 74 NQQTVDYPSFKLVIVGDGG 130 N+Q V FKLV+VGDGG Sbjct: 4 NKQDV-VAEFKLVLVGDGG 21
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.108e-24 Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 3 Query: 129 APGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401 A GKTTFV RH+TGEF K+Y TIGVE+ L F+ N ++ DTAGQEKFGGLRDGYY+ ++ FDVT R+TYKNV +W+RD+ R Sbjct: 16 ATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLLFFDVTNRVTYKNVESWYRDVFR 112 HSP 2 Score: 23.0978 bits (48), Expect = 2.108e-24 Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2 Query: 98 SFKLVIVGDGGT 133 SFK+++VGDG T Sbjct: 6 SFKVILVGDGAT 17 The following BLAST results are available for this feature:
BLAST of CF504354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504354 ID=CF504354; Name=CF504354; organism=Citrus sinensis; type=EST; length=401bpback to top |