CF504354

Overview
NameCF504354
Unique NameCF504354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 392
            GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F  WDTAGQEK   L+D YYI    AI  FDVT+R+T +N+  W ++
Sbjct:   19 GKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKE 105          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.707e-12
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  129 APGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 395
            A GK+  + R    EF +K + TIGV+        +   I   CWDTAGQE+F  +  GYY     A+I++D+T+++++KNV  W  +L
Sbjct:   20 AVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNEL 108          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 3
Query:  135 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 401
            GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE+F  L   Y      AI+++DV+ R T+ N   W  D+ R
Sbjct:   21 GKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHR 109          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 3
Query:   81 KLLIIQASNL*LSAMVAPGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW 383
            K+++I  SN+        GKT  V R  +G F    + TIGV+    +   N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W
Sbjct:   17 KIILIGDSNV--------GKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHW 109          
BLAST of CF504354 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.627e-11
Identity = 35/123 (28.46%), Postives = 64/123 (52.03%), Query Frame = 3
Query:   27 LKFKIQTQQINSWLCRISKLLIIQASNL*LSAMVAPGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 395
            ++F    + ++  +  + K+++I  SN+        GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T+++VP W  ++
Sbjct:    1 MQFSSAARTVDENVDYLFKVILIGDSNV--------GKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEI 115          
The following BLAST results are available for this feature:
BLAST of CF504354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GSP1_ENCCU6.883e-1748.28GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RB11C_DICDI8.707e-1237.08Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RBH1C_ARATH3.309e-1134.83Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB19_XENTR7.371e-1135.64Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RAB19_RAT9.627e-1128.46Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-843 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504354 ID=CF504354; Name=CF504354; organism=Citrus sinensis; type=EST; length=401bp
ATTCCCCGACACTGAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGCAA
CAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGC
TTCAAACTTGTAATTGTCGGCGATGGTGGCACCTGGGAAGACTACCTTTG
TGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATT
GGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACG
ATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAG
ATGGATACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACT
GCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAG
G
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