CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.626e-13
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  137 ERCDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            E  +  Y+GVR+R WGKY +EIR PN +  RIWLG+YDTA +A RA+D A F LRGR A
Sbjct:   82 EEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKA 140          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.890e-13
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            RY+GVRKR WG+Y +EIR P  + R+WLG++DTA++AARA+DAA    RG  AK
Sbjct:   30 RYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAK 83          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   86 IT*NPLKMVK-HVVEKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +T  P  M K  V  KP +     Y+GVR+R+WGK+V+EIRLP +R R+WLG+++TA++AA A+D A   +RG +A+
Sbjct:   91 LTAKPTSMKKIDVATKPVKL----YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNAR 163          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  128 KPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            K   R D  Y+GVR R WGK+VSEIR P  ++RIWLG++ T E AARA DAA   ++G SA
Sbjct:   34 KKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSA 94          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  125 EKPAERCDSR------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +KPA R   R      Y+GVR+R  GK+VSE+R PN + RIWLG++ TAE AARA D A   LRGRSA
Sbjct:   32 KKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSA 99          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.758e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  110 VKHVVEKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            VK    K  E    RY+GVRKR WG+Y +EIR P  ++R+WLG++DT E+AARA+D      RG  AK
Sbjct:    5 VKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAK 72          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.758e-12
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 2
Query:   59 HHSSKSRIPIT*NPLKMVKHVVEKPA--ERCDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            HH + S +     PL  +      P   E     Y+GVR+R WGKY +EIR PN +  R+WLG++DTA +AAR +D A F LRG  A
Sbjct:   38 HHCTTSTLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKA 124          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  125 EKPAERC-DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            EK A R   ++Y+G+R+R WGK+ +EIR P   ARIWLG++ TAE+AARA+DAA   +RG  AK
Sbjct:  114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAK 177          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            R++GVRKR WG++ +EIR P  +AR+WLG++D+AE+AARA+D+A   LRG  AK
Sbjct:   27 RFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAK 80          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  140 RCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            R +  ++GVRKR WG+Y +EIR P  + R+WLG++DTAE+AARA+D A    RG  AK
Sbjct:   28 RKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAK 85          
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
EF104_ARATH4.626e-1359.32Ethylene-responsive transcription factor ERF104 OS... [more]
ERF79_ARATH7.890e-1359.26Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF57_ARATH1.030e-1246.75Ethylene-responsive transcription factor ERF057 OS... [more]
ERF37_ARATH1.030e-1255.74Ethylene-responsive transcription factor ERF037 OS... [more]
DRE1B_ARATH1.030e-1255.88Dehydration-responsive element-binding protein 1B ... [more]
ERF76_ARATH1.758e-1250.00Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF105_ARATH1.758e-1243.68Ethylene-responsive transcription factor ERF105 OS... [more]
RA212_ARATH2.296e-1254.69Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF82_ARATH2.296e-1257.41Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF80_ARATH2.296e-1253.45Ethylene-responsive transcription factor 9 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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