CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            Y+GVR R WGK+VSEIR P  ++RIWLG+Y TAE AARA D A   ++G +A
Sbjct:  100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTA 151          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            RY+GVR+R WGK+ +EIR P   AR+WLG++D AE AARA+D A    RG  AK
Sbjct:  184 RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAK 237          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.679e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   47 NSIQHHSSKS-RIPIT*NPLKMVKHVVEKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +S  H S ++ R P+     K  K   E+        ++GVR R+WGK+VSEIR P  ++RIWLG++ T E AARA D A   ++G SA
Sbjct:    3 DSSSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSA 91          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.724e-12
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  149 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            ++Y+G+R+R WGK+ +EIR P   +R WLG++DTAE+AARA+DAA   +RG  AK
Sbjct:  126 NQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  149 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +RY+GVR+R WG+Y +EIR P S+ R WLG++DTAE+AA A+D+A    RG  A+
Sbjct:   55 TRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKAR 109          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            RY+GVR+R WG+Y +EIR P  + R+WLGS++T E+AARA+D+A    RG  A
Sbjct:   52 RYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKA 104          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            Y+G+R+R WGK+ +EIR P+   R+WLG++ TA++AARA+D A   +RGR AK
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAK 102          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   47 NSIQHHSSKSRIP-----IT*NPLKMVKHVVEKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            NS +  S K R P     I     ++V+ V   P E+    Y+GVR+R WGK+ +EIR PN +  R+WLG++DTA +AA+A+D A F LRG  A
Sbjct:  106 NSPKQTSFKERKPSLNIAIPMKQQEVVQKVEVVPTEK--KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKA 197          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            ++GVR R+WGK+VSEIR P  ++RIWLG++ TAE AARA D A   ++G SA
Sbjct:   45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSA 96          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.488e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            Y+GVRKR WGK+VSEIR P  ++RIWLG++ + E AARA D A   ++G SA
Sbjct:   36 YRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASA 87          
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ERF34_ARATH3.916e-1259.62Ethylene-responsive transcription factor ERF034 OS... [more]
ABR1_ARATH5.114e-1257.41Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF39_ARATH6.679e-1241.57Ethylene-responsive transcription factor ERF039 OS... [more]
RAP22_ARATH8.724e-1254.55Ethylene-responsive transcription factor RAP2-2 OS... [more]
ESR1_ARATH1.139e-1154.55Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF77_ARATH1.139e-1154.72Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF71_ARATH1.139e-1152.83Ethylene-responsive transcription factor ERF071 OS... [more]
ERF5_TOBAC1.139e-1143.62Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF38_ARATH1.139e-1157.69Ethylene-responsive transcription factor ERF038 OS... [more]
TINY_ARATH1.488e-1157.69Ethylene-responsive transcription factor TINY OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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