CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   20 PNHTQKFRVNSIQ-HHSSKSRIPIT*NPLKMVKHV-----VEKPAE--RCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            P    K  +N I+   SS S   ++ +P K  K +     V+KP+   +   +Y+GVR+R WGK+ +EIR P  R RIWLG++ TAE+AA  +D A   LRG  A
Sbjct:   64 PRRRVKRLINEIRVEPSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDA 168          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +Y+GVR+R WGKY +EIR       R+WLG++DTAE+AARA+D A + +RG++A
Sbjct:   14 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAA 67          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            Y+GVRKR WG+Y +EIR P  + R+WLG++DT E+AA A+D A   LRG  AK
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAK 64          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  149 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            SRYKG+R+R WG++ +EIR P    R+WLG+++TAE+AARA+D     +RG  AK
Sbjct:   23 SRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAK 77          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +Y+GVR+R WGKY +EIR       R+WLG++DTAE AARA+D A + +RG++A
Sbjct:   19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAA 72          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  146 DSRYKGVRKRKWGKYVSEIR-LPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            + +Y+GVRKR WGKY +EIR      AR+WLG+++TAE AARA+D A F +RG+ A
Sbjct:   11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRA 66          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +Y+GVR+R WGK+ +EIR P+SR RIWLG++ TAE+AA A+D A   L+G  A
Sbjct:  104 KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKA 156          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  104 KMVKHVVEKPA--ERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            K  K VV  P        +++GVR+R WGK+ +EIR P+ R R+WLG++DTAE+AA  +D A   LRG +A+
Sbjct:   68 KRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAE 139          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            RY+GVR+R WGK+V+EIR P  R R WLG++ TAE AARA+D A   L G  A+
Sbjct:   54 RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQ 107          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.654e-11
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  125 EKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +K  ++  +R+ GVR+R WG+Y +EIR P ++ R WLG++DTAE+AA A+D A   +RG  A+
Sbjct:   10 KKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRAR 72          
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CRF4_ARATH2.538e-1140.00Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF96_ARATH3.315e-1153.70Ethylene-responsive transcription factor ERF096 OS... [more]
ERF81_ARATH3.315e-1156.60Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF73_ARATH3.315e-1152.73Ethylene-responsive transcription factor ERF073 OS... [more]
ERF97_ARATH4.329e-1153.70Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF95_ARATH4.329e-1155.36Ethylene-responsive transcription factor ERF095 OS... [more]
CRF6_ARATH4.329e-1156.60Ethylene-responsive transcription factor CRF6 OS=A... [more]
CRF1_ARATH4.329e-1145.83Ethylene-responsive transcription factor CRF1 OS=A... [more]
ABI4_ARATH4.329e-1157.41Ethylene-responsive transcription factor ABI4 OS=A... [more]
LEP_ARATH5.654e-1146.03Ethylene-responsive transcription factor LEP OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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