CF504360

Overview
NameCF504360
Unique NameCF504360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length369
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.004e-32
Identity = 67/98 (68.37%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   76 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGL 97          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.418e-32
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.935e-31
Identity = 64/97 (65.98%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   79 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGL 115          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.935e-31
Identity = 63/94 (67.02%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   88 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 4.935e-31
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   85 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNG 366
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D   +  F  RTHFGGG+STGF LIYDS +S KKFEP YRL+R G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.445e-31
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.449e-30
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 1
Query:   91 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGL 96          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 5.456e-30
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   85 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNG 366
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   D +++  F  RTH+GGG++TGF LIYD V++ KKFEP YRL+R G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95          
BLAST of CF504360 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 1.216e-29
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   88 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGL 369
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGL 96          
The following BLAST results are available for this feature:
BLAST of CF504360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_SPOFR2.004e-3268.3740S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_MACFA3.418e-3273.1240S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_RHIRA4.935e-3165.9840S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ICTPU4.935e-3167.0240S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24B_SCHPO4.935e-3168.0940S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_TAKRU6.445e-3167.7440S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_ORYLA2.449e-3067.7440S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24A_SCHPO5.456e-3063.8340S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_YEAST1.216e-2968.0940S ribosomal protein S24 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-849 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504360 ID=CF504360; Name=CF504360; organism=Citrus sinensis; type=EST; length=369bp
CTCGCTTCATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGAT
TCAGCAGACTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTC
GAACTAGGAAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTT
ATTGATGTTCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAA
GGAGAAGTTGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTG
TTTTTAAGTTTCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGT
CTGATCTATGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAG
GCTTATCAGGAATGGACTT
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