CF504361

Overview
NameCF504361
Unique NameCF504361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.634e-50
Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 3
Query:  135 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FG
Sbjct:    3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG 98          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.747e-44
Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            AT A+   +FAGQ A++ S        ++  GRITMR+ V KSAP S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFG
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 126          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.892e-44
Identity = 91/129 (70.54%), Postives = 98/129 (75.97%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            +T AI  +A AG            KVG    GRITMR+TV     +A  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFG
Sbjct:    4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 123          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.479e-43
Identity = 88/127 (69.29%), Postives = 100/127 (78.74%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            AT A+   +FAGQ A++ S       G    GR++MR+TV    A  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFG
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 126          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.931e-43
Identity = 84/127 (66.14%), Postives = 101/127 (79.53%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            A +A+  +A AGQ+ ++  NE  RKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFG
Sbjct:    3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG 129          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.931e-43
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            AT A+  S+FAG+ A++ S       G    G++TMR+TV  A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFG
Sbjct:    4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.303e-43
Identity = 91/128 (71.09%), Postives = 98/128 (76.56%), Query Frame = 3
Query:   45 MATS-AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            MATS A   S F+GQ  L+  NE  RKVG  +  R+ M      AP  SIWYG DRP YLGPFS   PSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L+KNGVKFG
Sbjct:    1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG 126          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.620e-43
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            +T A+   A AG+ A++ +       G    GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFG
Sbjct:    4 STMALSSPALAGK-AVKVAPSSSELFG---NGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 125          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.339e-43
Identity = 87/129 (67.44%), Postives = 99/129 (76.74%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            +T A+  S FAG+ A++ S       G    GR+TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFG
Sbjct:    4 STMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.339e-43
Identity = 86/129 (66.67%), Postives = 96/129 (74.42%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            AT AI  S+FAG+     S+       +   G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFG
Sbjct:    4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG 127          
The following BLAST results are available for this feature:
BLAST of CF504361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB25_SOLLC3.634e-5093.75Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2B_SOLLC1.747e-4471.65Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_MAIZE3.892e-4470.54Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_TOBAC1.479e-4369.29Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2_PHYPA1.931e-4366.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC1.931e-4368.22Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_POLMU4.303e-4371.09Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_APIGR5.620e-4368.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2G_SOLLC7.339e-4367.44Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_PETSP7.339e-4366.67Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-850 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504361 ID=CF504361; Name=CF504361; organism=Citrus sinensis; type=EST; length=424bp
AAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCA
ACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCA
ATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCA
CCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCA
GACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGA
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