CF504361

Overview
NameCF504361
Unique NameCF504361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:   48 ATSAIQQSAFAGQTALRQSNEF-VRKVGVADGGRITMRR-----TVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 413
            A+S I   AF+  ++ R  +     K     G R+ + +     T +SA    +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI 132
The following BLAST results are available for this feature:
BLAST of CF504361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB12_SOLLC9.349e-1434.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-850 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504361 ID=CF504361; Name=CF504361; organism=Citrus sinensis; type=EST; length=424bp
AAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCA
ACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCA
ATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCA
CCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCA
GACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGA
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