CF504375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 6.400e-26 Identity = 55/108 (50.93%), Postives = 81/108 (75.00%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI-QTGHIFTRPREKQAKADE 322 NL + L +K++GINNLL FDF+D P P+ L+ ++E LY+LGAL+ G LTKLG++MAEFP DP LSK L+AS GC +E+L+I++M+ + +F RP++K +AD+ Sbjct: 778 NLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADK 885
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 8.359e-26 Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L +K +GI++L+ FDF+DPP+P+ L+ A+E L LGALD+ G LT+LG MAEFPLDP L+KM++AS D CS+EIL++ AM+ F RP E + ADE Sbjct: 274 NLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSVPQCFLRPNEAKKLADE 380
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.149e-25 Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 NL L + +G+ +L+ FDF+DPP P LI A+E L+ LGALD+EG LT++G M+EFPLDP LSKML+ S + CS+EILTI AM+ + F RP++ + +AD Sbjct: 433 NLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEAD 538
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25 Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L +K +GI++L+ FDF+DPP+P+ L+ A+E L L AL+++G LT+LG MAEFPLDP L+KM++AS D CS+E+L+I AM+ F RP E + ADE Sbjct: 506 NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADE 612
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25 Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L +K +GI++L+ FDF+DPP+P+ L+ A+E L L AL+++G LT+LG MAEFPLDP L+KM++AS D CS+E+L+I AM+ F RP E + ADE Sbjct: 506 NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADE 612
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25 Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L +K +GI++L+ FDF+DPP+P+ L+ A+E L L AL+++G LT+LG MAEFPLDP L+KM++AS D CS+E+L+I AM+ F RP E + ADE Sbjct: 506 NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADE 612
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24 Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL + L +K++G+ +LL F F+DPP ++++M QL+ LGALD G LT G+ M EFPLDP LSKML+ S D+GCS EIL I++M+ IF RP+ ++ ++D+ Sbjct: 890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQ 996
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24 Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL + L +K++G+ +LL F F+DPP ++++M QL+ LGALD G LT G+ M EFPLDP LSKML+ S D+GCS EIL I++M+ IF RP+ ++ ++D+ Sbjct: 890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQ 996
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.512e-24 Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQ-TGHIFTRPREKQAKAD 319 NL + L +K++GI++L+ FDF+DPP + L+ A+EQLY+LGAL+ G LTKLG++MAEFP DP +SKM++AS CS+EI+TI AM+ +F RP+ + AD Sbjct: 725 NLGNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYALGALNHRGELTKLGRRMAEFPCDPCMSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVIHAD 831
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24 Identity = 50/107 (46.73%), Postives = 77/107 (71.96%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL T L +K +GI++L+ FDF+DPP+P+ ++ A+E+L L LD+EG LT LG+ ++FPLDP L+ ML+ S + CS EILTI+AM+ ++F RP + + +AD+ Sbjct: 461 NLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567 The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bpback to top |