CF504375

Overview
NameCF504375
Unique NameCF504375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.400e-26
Identity = 55/108 (50.93%), Postives = 81/108 (75.00%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI-QTGHIFTRPREKQAKADE 322
            NL +  L +K++GINNLL FDF+D P P+ L+ ++E LY+LGAL+  G LTKLG++MAEFP DP LSK L+AS   GC +E+L+I++M+ +   +F RP++K  +AD+
Sbjct:  778 NLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADK 885          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.359e-26
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L +K +GI++L+ FDF+DPP+P+ L+ A+E L  LGALD+ G LT+LG  MAEFPLDP L+KM++AS D  CS+EIL++ AM+     F RP E +  ADE
Sbjct:  274 NLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYSCSNEILSVTAMLSVPQCFLRPNEAKKLADE 380          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.149e-25
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            NL    L +  +G+ +L+ FDF+DPP P  LI A+E L+ LGALD+EG LT++G  M+EFPLDP LSKML+ S +  CS+EILTI AM+   + F RP++ + +AD
Sbjct:  433 NLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEAD 538          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L +K +GI++L+ FDF+DPP+P+ L+ A+E L  L AL+++G LT+LG  MAEFPLDP L+KM++AS D  CS+E+L+I AM+     F RP E +  ADE
Sbjct:  506 NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADE 612          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L +K +GI++L+ FDF+DPP+P+ L+ A+E L  L AL+++G LT+LG  MAEFPLDP L+KM++AS D  CS+E+L+I AM+     F RP E +  ADE
Sbjct:  506 NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADE 612          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L +K +GI++L+ FDF+DPP+P+ L+ A+E L  L AL+++G LT+LG  MAEFPLDP L+KM++AS D  CS+E+L+I AM+     F RP E +  ADE
Sbjct:  506 NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADE 612          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL +  L +K++G+ +LL F F+DPP    ++++M QL+ LGALD  G LT  G+ M EFPLDP LSKML+ S D+GCS EIL I++M+    IF RP+ ++ ++D+
Sbjct:  890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQ 996          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24
Identity = 51/107 (47.66%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL +  L +K++G+ +LL F F+DPP    ++++M QL+ LGALD  G LT  G+ M EFPLDP LSKML+ S D+GCS EIL I++M+    IF RP+ ++ ++D+
Sbjct:  890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQ 996          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.512e-24
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQ-TGHIFTRPREKQAKAD 319
            NL +  L +K++GI++L+ FDF+DPP  + L+ A+EQLY+LGAL+  G LTKLG++MAEFP DP +SKM++AS    CS+EI+TI AM+     +F RP+ +   AD
Sbjct:  725 NLGNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYALGALNHRGELTKLGRRMAEFPCDPCMSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVIHAD 831          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24
Identity = 50/107 (46.73%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL  T L +K +GI++L+ FDF+DPP+P+ ++ A+E+L  L  LD+EG LT LG+  ++FPLDP L+ ML+ S +  CS EILTI+AM+   ++F RP + + +AD+
Sbjct:  461 NLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567          
The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CDC28_SCHPO6.400e-2650.93Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_STRPU8.359e-2652.34Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI4.149e-2550.94Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_PONAB9.242e-2550.47Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_MOUSE9.242e-2550.47Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_HUMAN9.242e-2550.47Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_HUMAN2.059e-2447.66Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN2.059e-2447.66Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_CAEEL3.512e-2450.47Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP43_YEAST4.587e-2446.73Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-864 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bp
TAATCTTGTACATACTACCCTCACTATGAAGGCTATGGGAATCAATAATC
TGCTGTCTTTTGATTTTGTGGATCCTCCATCTCCCCAAGCTCTTATTTCT
GCCATGGAGCAATTATACAGTCTTGGAGCTCTGGATGAGGAGGGACTTCT
GACTAAATTAGGTAAGAAAATGGCAGAATTTCCCCTAGATCCGCCATTAT
CAAAGATGCTGCTAGCAAGTGTAGACCTTGGTTGCAGTGATGAGATATTA
ACGATCATCGCCATGATTCAAACTGGCCATATCTTCACCAGACCCAGGGA
AAAACAGGCTAAAGCAGATGAAAA
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