CF504375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24 Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH-IFTRPREKQAKAD 319 +L + L +K++GI++L+ FDF+DPP + L+ A+EQLY+LGAL+ G LT G+KMAE P+DP LSKM+LAS CS+EILT+ AM+ + IF RP++K AD Sbjct: 762 SLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHAD 868
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24 Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH-IFTRPREKQAKAD 319 +L + L +K++GI++L+ FDF+DPP + L+ A+EQLY+LGAL+ G LT G+KMAE P+DP LSKM+LAS CS+EILT+ AM+ + IF RP++K AD Sbjct: 759 SLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHAD 865
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.022e-23 Identity = 52/107 (48.60%), Postives = 75/107 (70.09%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L +K +G +L+ FDF+DPP+P+ L+ A+E L L A++++G LT+LG MAEFPLDP L+KML+ S +L CS+EIL+I AM+ + RP E + +ADE Sbjct: 450 NLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTELNCSNEILSITAMLSVPQCWVRPNEMRTEADE 556
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.517e-22 Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL T L +K +GI++L+ FD++DPP+P+ ++ A+E+L L LD+ G LT LG+K +EFPLDP L+ ML+ S + CS+E+L++ A++ ++F RP + ADE Sbjct: 443 NLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRPNSARKLADE 549
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 4.293e-22 Identity = 45/106 (42.45%), Postives = 76/106 (71.70%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 NL +T L +K++G+ + FDF+D P L++++ +L++LGALD G LT LGKKM+ FP+DP LSK+++ + D C++EI+TI++M+ +F RP+E+ ++D Sbjct: 850 NLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESD 955
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21 Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLS-FDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 NL +T L +K++ + + LS F F+D P Q +S++ +L+ +GA+D G LT LG +MA+FPL P LSK+LL +V GCSDE+LTI++M+ +F RP+E+Q +AD Sbjct: 723 NLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAIDTSGQLTPLGLQMAKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYRPKERQKEAD 829
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.783e-21 Identity = 51/106 (48.11%), Postives = 76/106 (71.70%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKA 316 NL L +KA+GI+N+L F F+ PP Q+++ A+E LY+LG LD++ LT+ LG ++AEFPL+P +KMLL S + GCS EIL+I AM+Q +IF P ++++A Sbjct: 426 NLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSQA 531
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.747e-21 Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKA 316 NL L +KA+GI+N+L F F+ PP Q+++ A+E LY+LG LD++ LT+ LG ++AEFPL+P +KMLL S + GCS EIL+I AM+Q +IF P +++ A Sbjct: 426 NLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHA 531
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19 Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2 Query: 5 LVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319 + T L +KA+G+ N+ F ++ PP A+I+ +E LY+LGA+DE LT LG +MAEFPL P SK LL S + GCS E++TI+AM+Q +F P ++ +AD Sbjct: 446 MASTILQLKALGVQNVHRFHYLSPPPSWAMINGLELLYALGAIDETSQLTSPLGLQMAEFPLPPMHSKCLLKSAEFGCSTEMVTIVAMMQIQDVFITPYRQRHQAD 551
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 6.415e-18 Identity = 41/107 (38.32%), Postives = 72/107 (67.29%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 +L LT+KA G N++++F ++DPPS + L+ A+E LYS+GALD+ G + LG +M+ PL P L++ +LA+ + C E++ +++ + T +F P+EK+ +A E Sbjct: 454 DLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLFPQEKRDEAIE 560 The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bpback to top |