CF504375

Overview
NameCF504375
Unique NameCF504375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH-IFTRPREKQAKAD 319
            +L +  L +K++GI++L+ FDF+DPP  + L+ A+EQLY+LGAL+  G LT  G+KMAE P+DP LSKM+LAS    CS+EILT+ AM+   + IF RP++K   AD
Sbjct:  762 SLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHAD 868          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH-IFTRPREKQAKAD 319
            +L +  L +K++GI++L+ FDF+DPP  + L+ A+EQLY+LGAL+  G LT  G+KMAE P+DP LSKM+LAS    CS+EILT+ AM+   + IF RP++K   AD
Sbjct:  759 SLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHAD 865          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.022e-23
Identity = 52/107 (48.60%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L +K +G  +L+ FDF+DPP+P+ L+ A+E L  L A++++G LT+LG  MAEFPLDP L+KML+ S +L CS+EIL+I AM+     + RP E + +ADE
Sbjct:  450 NLGSVVLQLKKLGTEDLVHFDFMDPPAPETLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTELNCSNEILSITAMLSVPQCWVRPNEMRTEADE 556          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.517e-22
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL  T L +K +GI++L+ FD++DPP+P+ ++ A+E+L  L  LD+ G LT LG+K +EFPLDP L+ ML+ S +  CS+E+L++ A++   ++F RP   +  ADE
Sbjct:  443 NLSSTVLELKKLGIDDLVHFDYMDPPAPETMMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRPNSARKLADE 549          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.293e-22
Identity = 45/106 (42.45%), Postives = 76/106 (71.70%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            NL +T L +K++G+  +  FDF+D P    L++++ +L++LGALD  G LT LGKKM+ FP+DP LSK+++ + D  C++EI+TI++M+    +F RP+E+  ++D
Sbjct:  850 NLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESD 955          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLS-FDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            NL +T L +K++ + + LS F F+D P  Q  +S++ +L+ +GA+D  G LT LG +MA+FPL P LSK+LL +V  GCSDE+LTI++M+    +F RP+E+Q +AD
Sbjct:  723 NLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAIDTSGQLTPLGLQMAKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYRPKERQKEAD 829          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.783e-21
Identity = 51/106 (48.11%), Postives = 76/106 (71.70%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKA 316
            NL    L +KA+GI+N+L F F+ PP  Q+++ A+E LY+LG LD++  LT+ LG ++AEFPL+P  +KMLL S + GCS EIL+I AM+Q  +IF  P  ++++A
Sbjct:  426 NLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSQA 531          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.747e-21
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKA 316
            NL    L +KA+GI+N+L F F+ PP  Q+++ A+E LY+LG LD++  LT+ LG ++AEFPL+P  +KMLL S + GCS EIL+I AM+Q  +IF  P  +++ A
Sbjct:  426 NLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHA 531          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2
Query:    5 LVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTK-LGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKAD 319
            +  T L +KA+G+ N+  F ++ PP   A+I+ +E LY+LGA+DE   LT  LG +MAEFPL P  SK LL S + GCS E++TI+AM+Q   +F  P  ++ +AD
Sbjct:  446 MASTILQLKALGVQNVHRFHYLSPPPSWAMINGLELLYALGAIDETSQLTSPLGLQMAEFPLPPMHSKCLLKSAEFGCSTEMVTIVAMMQIQDVFITPYRQRHQAD 551          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.415e-18
Identity = 41/107 (38.32%), Postives = 72/107 (67.29%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            +L    LT+KA G N++++F ++DPPS + L+ A+E LYS+GALD+ G +  LG +M+  PL P L++ +LA+ +  C  E++ +++ + T  +F  P+EK+ +A E
Sbjct:  454 DLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLFPQEKRDEAIE 560          
The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DHX16_PANTR5.991e-2451.40Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN5.991e-2451.40Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_CAEEL1.022e-2348.60Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_SCHPO2.517e-2243.93Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO4.293e-2242.45Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_YEAST1.249e-2146.73Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX35_PONAB2.783e-2148.11Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX35_HUMAN4.747e-2148.11Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
DHX35_CAEEL1.527e-1945.28Probable ATP-dependent RNA helicase DHX35 homolog ... [more]
PRH1_SCHPO6.415e-1838.32Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-864 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bp
TAATCTTGTACATACTACCCTCACTATGAAGGCTATGGGAATCAATAATC
TGCTGTCTTTTGATTTTGTGGATCCTCCATCTCCCCAAGCTCTTATTTCT
GCCATGGAGCAATTATACAGTCTTGGAGCTCTGGATGAGGAGGGACTTCT
GACTAAATTAGGTAAGAAAATGGCAGAATTTCCCCTAGATCCGCCATTAT
CAAAGATGCTGCTAGCAAGTGTAGACCTTGGTTGCAGTGATGAGATATTA
ACGATCATCGCCATGATTCAAACTGGCCATATCTTCACCAGACCCAGGGA
AAAACAGGCTAAAGCAGATGAAAA
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