CF504375

Overview
NameCF504375
Unique NameCF504375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX32_XENLA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Xenopus laevis GN=dhx32 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286
            NL+   L +K M I  L   DF++ P P++L+ A+E L  L ALD +G L++ G  M+EFPLDP LSK +LA+ +  C DE+LT+ AM+   + F
Sbjct:  427 NLISMVLFLKRMDIAGLAHCDFINRPDPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILAACEFDCVDEMLTLAAMVTAPNCF 521          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX32_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Homo sapiens GN=DHX32 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFT 289
            NL    L MK + I  L   DF++ P+P++L+ A+E L  L ALD +G L++ G  M+EFPLDP LSK +LAS +  C DE+LTI AM+   + F+
Sbjct:  425 NLTSMVLFMKRIDIAGLGHCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASCEFDCVDEVLTIAAMVTAPNCFS 520          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322
            +L    LT+K + I++++ F ++DPP+ + ++ A++QLY   A+D  G +T+LG  M EFPL P L+  ++ +  L C D +L I AM+   ++F RP   E Q +A++
Sbjct:  430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322
            +L    LT+K + I++++ F ++DPP+ + ++ A++QLY   A+D  G +T+LG  M EFPL P L+  ++ +  L C D +L I AM+   ++F RP   E Q +A++
Sbjct:  430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322
            +L    LT+K + I++++ F ++DPP+ + ++ A++QLY   A+D  G +T+LG  M EFPL P L+  ++ +  L C D +L I AM+   ++F RP   E Q +A++
Sbjct:  430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322
            +L    LT+K + I++++ F ++DPP+ + ++ A++QLY   A+D  G +T+LG  M EFPL P L+  ++ +  L C D +L I AM+   ++F RP   E Q +A++
Sbjct:  430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX32_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Mus musculus GN=Dhx32 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.842e-16
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286
            NL    L MK + I  L   DF++ P+P++L+ A+E L  L ALD +G L++ G  M+EFPLDP LSK +LAS +  C DE+LTI AM+     F
Sbjct:  426 NLTSMVLFMKRVDIAGLGRCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASCEFDCVDEMLTIAAMVTAPSCF 520          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.892e-15
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGAL---DEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQ 307
            NL    L + AM + N+L+FDF+  PSP  + +A+ QL  LGAL   D++  LT +G+KMA FPL+P  +K +L S    C++EILTI++++    +   P  ++
Sbjct:  438 NLASVMLQLLAMKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTIVSLLSVDSVLHNPPSRR 542          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DQX1_HUMAN (ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.083e-15
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295
            NL    L +K   I       F+D P+P+AL+ A+E L  L ALD++G L+ LG  ++EFPL P L+K LLAS +  C DE+LT+ AM+     FTRP
Sbjct:  409 NLSSLVLLLKRRQIAEPGECHFLDQPAPEALMQALEDLDYLAALDDDGDLSDLGVILSEFPLAPELAKALLASCEFDCVDEMLTLAAMLTAAPGFTRP 506          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.083e-15
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGAL---DEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L + AM + N+L+FDF+  PSP  + +A+ QL  LGAL   D++  LT +G+KMA FPL+P  +K +L S    C++EILTI++++    +   P    A+ DE
Sbjct:  429 NLASVILQLLAMKVPNVLTFDFMSKPSPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEILTIVSLLSVDSVLYNP---PARRDE 535          
The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DHX32_XENLA2.064e-1644.21Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX32_HUMAN2.064e-1645.83Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX40_RAT4.597e-1635.78Probable ATP-dependent RNA helicase DHX40 OS=Rattu... [more]
DHX40_PONAB4.597e-1635.78Probable ATP-dependent RNA helicase DHX40 OS=Pongo... [more]
DHX40_MOUSE4.597e-1635.78Probable ATP-dependent RNA helicase DHX40 OS=Mus m... [more]
DHX40_HUMAN4.597e-1635.78Probable ATP-dependent RNA helicase DHX40 OS=Homo ... [more]
DHX32_MOUSE7.842e-1646.32Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX33_HUMAN3.892e-1539.05Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
DQX1_HUMAN5.083e-1544.90ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN... [more]
DHX33_MOUSE5.083e-1540.00Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-864 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bp
TAATCTTGTACATACTACCCTCACTATGAAGGCTATGGGAATCAATAATC
TGCTGTCTTTTGATTTTGTGGATCCTCCATCTCCCCAAGCTCTTATTTCT
GCCATGGAGCAATTATACAGTCTTGGAGCTCTGGATGAGGAGGGACTTCT
GACTAAATTAGGTAAGAAAATGGCAGAATTTCCCCTAGATCCGCCATTAT
CAAAGATGCTGCTAGCAAGTGTAGACCTTGGTTGCAGTGATGAGATATTA
ACGATCATCGCCATGATTCAAACTGGCCATATCTTCACCAGACCCAGGGA
AAAACAGGCTAAAGCAGATGAAAA
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