CF504375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX32_XENLA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Xenopus laevis GN=dhx32 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16 Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286 NL+ L +K M I L DF++ P P++L+ A+E L L ALD +G L++ G M+EFPLDP LSK +LA+ + C DE+LT+ AM+ + F Sbjct: 427 NLISMVLFLKRMDIAGLAHCDFINRPDPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILAACEFDCVDEMLTLAAMVTAPNCF 521
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX32_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Homo sapiens GN=DHX32 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16 Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFT 289 NL L MK + I L DF++ P+P++L+ A+E L L ALD +G L++ G M+EFPLDP LSK +LAS + C DE+LTI AM+ + F+ Sbjct: 425 NLTSMVLFMKRIDIAGLGHCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASCEFDCVDEVLTIAAMVTAPNCFS 520
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16 Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322 +L LT+K + I++++ F ++DPP+ + ++ A++QLY A+D G +T+LG M EFPL P L+ ++ + L C D +L I AM+ ++F RP E Q +A++ Sbjct: 430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16 Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322 +L LT+K + I++++ F ++DPP+ + ++ A++QLY A+D G +T+LG M EFPL P L+ ++ + L C D +L I AM+ ++F RP E Q +A++ Sbjct: 430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16 Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322 +L LT+K + I++++ F ++DPP+ + ++ A++QLY A+D G +T+LG M EFPL P L+ ++ + L C D +L I AM+ ++F RP E Q +A++ Sbjct: 430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16 Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP--REKQAKADE 322 +L LT+K + I++++ F ++DPP+ + ++ A++QLY A+D G +T+LG M EFPL P L+ ++ + L C D +L I AM+ ++F RP E Q +A++ Sbjct: 430 SLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX32_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 OS=Mus musculus GN=Dhx32 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 7.842e-16 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286 NL L MK + I L DF++ P+P++L+ A+E L L ALD +G L++ G M+EFPLDP LSK +LAS + C DE+LTI AM+ F Sbjct: 426 NLTSMVLFMKRVDIAGLGRCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASCEFDCVDEMLTIAAMVTAPSCF 520
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.892e-15 Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGAL---DEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQ 307 NL L + AM + N+L+FDF+ PSP + +A+ QL LGAL D++ LT +G+KMA FPL+P +K +L S C++EILTI++++ + P ++ Sbjct: 438 NLASVMLQLLAMKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEILTIVSLLSVDSVLHNPPSRR 542
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DQX1_HUMAN (ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 5.083e-15 Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295 NL L +K I F+D P+P+AL+ A+E L L ALD++G L+ LG ++EFPL P L+K LLAS + C DE+LT+ AM+ FTRP Sbjct: 409 NLSSLVLLLKRRQIAEPGECHFLDQPAPEALMQALEDLDYLAALDDDGDLSDLGVILSEFPLAPELAKALLASCEFDCVDEMLTLAAMLTAAPGFTRP 506
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.083e-15 Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGAL---DEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L + AM + N+L+FDF+ PSP + +A+ QL LGAL D++ LT +G+KMA FPL+P +K +L S C++EILTI++++ + P A+ DE Sbjct: 429 NLASVILQLLAMKVPNVLTFDFMSKPSPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEILTIVSLLSVDSVLYNP---PARRDE 535 The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bpback to top |