CF504375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DQX1_BOVIN (ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.670e-15 Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295 NL L +K I F+D P+P+AL+ A+E L L ALD++G L+ LG ++EFPL P L+K LLAS + C DE+LT+ AM+ FTRP Sbjct: 411 NLSSLMLLLKRRQIAEPGKCHFLDRPAPEALMQALEDLDYLAALDDDGDLSDLGVILSEFPLAPELAKALLASCEFDCVDEMLTLAAMLTAAPGFTRP 508
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: HRPA_HAEIN (ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae GN=hrpA PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.132e-14 Identity = 40/114 (35.09%), Postives = 71/114 (62.28%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALD-------EEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322 NL L M A+G++++ +F FVD P + + ++ L LGA + E+ LLT++G+++A+ P+DP L+KM+L++V+ GC E++ I++ + RP+EKQ +DE Sbjct: 436 NLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDE 549
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DQX1_MOUSE (ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.303e-14 Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 2 Query: 65 FVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295 F+D P+P+AL+ A+E L L AL+++G L+ LG ++EFPL P L+K LLAS + C DE+LT+ AM+ FTRP Sbjct: 430 FLDRPAPEALMRALEDLDYLAALNDDGELSDLGVILSEFPLPPELAKALLASCEFNCVDEMLTLAAMLTAAPGFTRP 506
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae GN=ECM16 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.586e-14 Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 2 Query: 20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286 L MK+M I+N+++F F PP AL A++ L LGALD + ++T+ GKKM+ FPL P SKMLL S + C I+ I++ + G F Sbjct: 852 LQMKSMAIHNIINFPFPTPPDRVALSKAIQLLQYLGALDNKEMITEDGKKMSLFPLSPRFSKMLLVSDEKACLPYIVAIVSALSVGDPF 940
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHR2_YEAST (Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13 Identity = 30/96 (31.25%), Postives = 62/96 (64.58%), Query Frame = 2 Query: 20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQ 307 L +K G+++LL++ + + P +A++ +++LY LGALD G +TK G++MA PL P LS +L+ + ++GC +++ I++ + ++ P ++ Sbjct: 450 LMLKRYGVDDLLNWTWFENPGKEAIVMGLQELYELGALDTRGKITKRGQQMALLPLQPHLSSVLIKASEVGCLSQVIDIVSCLSVENLLLNPSPEE 545
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13 Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 2 Query: 2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVD----LGCSDEILTIIAMI 268 NL +T L + ++G+ +L+ F +D PS L ++E LY LGAL+ +G +T+LGK M EFP +P +K+L + G +E LTI++M+ Sbjct: 586 NLSNTVLLLLSLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITRLGKMMCEFPCEPEFAKVLYTAATHEQCQGVLEECLTIVSML 678
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12 Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2 Query: 20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286 L MK M I+N+ +F F P L +++ L +LGA+D EG+LTKLG++M+ FPL P SKML+ GC ++ +++ + +F Sbjct: 825 LQMKNMNIDNIANFPFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIALVSALSINQLF 913
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12 Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 2 Query: 20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLT-KLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295 L +K +G+ N+L F F P L++A+E LY LG LDE G LT LG +++ LD +SK LL S GC+ EIL+I +++ G +F P Sbjct: 392 LFLKGLGLKNILQFPFFVRPPTVHLMAALEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASILTAGEVFYNP 484 The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bpback to top |