CF504386

Overview
NameCF504386
Unique NameCF504386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 213
            MAR KQTARKSTG +APRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H3V1_DICDI (Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:  109 TARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 486
            T+   T    PR ++       + PTT     P + R   +    IR+ + S + +I +LP  RLVREI   F   LR    A+LA+Q   EAYL  L ED+ L A HA R TI   D+   +R R
Sbjct:  495 TSASITTPTTPRIRVQRTTTTPTTPTT-----PRKKRRRRLVASVIRRLRNSVDFMIPRLPLSRLVREIMCLFDDGLRITPGALLAIQTTTEAYLTRLMEDSGLLASHAGRKTIRSVDMYAWKRAR 615
The following BLAST results are available for this feature:
BLAST of CF504386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETBO2.824e-1385.37Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3V1_DICDI2.643e-1135.71Histone H3.v1 OS=Dictyostelium discoideum GN=H3v1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-875 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504386 ID=CF504386; Name=CF504386; organism=Citrus sinensis; type=EST; length=518bp
TCACAAACTTTTCTTTGAATTTCTTTCCGTGATTAAGGCGTTGCATTCAG
ATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTA
CGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAG
CTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGAGTCAA
GAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTGAAATCCGCA
AATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTTCAGCGG
CTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAG
CCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTC
TGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATT
ATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTA
ATTTGGGATTCCTTATGT
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