CF504386

Overview
NameCF504386
Unique NameCF504386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 1.427e-65
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 4.152e-65
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTAR STGGKAPRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK+IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 3.515e-64
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 495
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGER 135          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 3.515e-64
Identity = 123/136 (90.44%), Postives = 131/136 (96.32%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 5.995e-64
Identity = 124/135 (91.85%), Postives = 128/135 (94.81%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 495
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 5.995e-64
Identity = 122/136 (89.71%), Postives = 129/136 (94.85%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 7.830e-64
Identity = 125/136 (91.91%), Postives = 128/136 (94.12%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRKQLATKA    A  TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 7.830e-64
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.023e-63
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CF504386 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 2.278e-63
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 1
Query:   91 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 498
            MARTKQTARKSTGGKAPRKQLATKAARKSAP  GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLV LFEDTNL AIHAKRVTI PKDI LARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CF504386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33B_LILLO1.427e-6593.43Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3L5_ARATH4.152e-6592.65Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H32_USTMA3.515e-6491.85Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_LODEL3.515e-6490.44Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MORAP5.995e-6491.85Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_SCHPO5.995e-6489.71Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H32_CICIN7.830e-6491.91Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_CANAL7.830e-6489.71Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H3_MASBA1.023e-6391.91Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H31_USTMA2.278e-6390.44Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-875 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504386 ID=CF504386; Name=CF504386; organism=Citrus sinensis; type=EST; length=518bp
TCACAAACTTTTCTTTGAATTTCTTTCCGTGATTAAGGCGTTGCATTCAG
ATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTA
CGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAG
CTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGAGTCAA
GAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTGAAATCCGCA
AATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTTCAGCGG
CTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAG
CCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTC
TGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATT
ATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTA
ATTTGGGATTCCTTATGT
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