CF504397 | Citrus Genome Database

Overview


Name	CF504397
Unique Name	CF504397
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	449

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.864e-58
Identity = 92/115 (80.00%), Postives = 103/115 (89.57%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +D+FHWQATIMGPP+SPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR +Y   AR
Sbjct:   25 PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAR 139

HSP 2 Score: 36.5798 bits (83), Expect = 7.864e-58
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL+DL +DPP  CS+ P
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.743e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISR 139

HSP 2 Score: 36.1946 bits (82), Expect = 1.743e-57
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DL +DPP  CS+ P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.743e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISR 139

HSP 2 Score: 36.1946 bits (82), Expect = 1.743e-57
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DL +DPP  CS+ P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.743e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISR 139

HSP 2 Score: 36.1946 bits (82), Expect = 1.743e-57
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DL +DPP  CS+ P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.743e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISR 139

HSP 2 Score: 36.1946 bits (82), Expect = 1.743e-57
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DL +DPP  CS+ P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.743e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISR 139

HSP 2 Score: 36.1946 bits (82), Expect = 1.743e-57
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DL +DPP  CS+ P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.743e-57
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISR 139

HSP 2 Score: 36.1946 bits (82), Expect = 1.743e-57
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DL +DPP  CS+ P
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.036e-57
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR
Sbjct:   25 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139

HSP 2 Score: 38.5058 bits (88), Expect = 5.036e-57
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DLQ+DPP  CS+ P
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.036e-57
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR
Sbjct:   25 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139

HSP 2 Score: 38.5058 bits (88), Expect = 5.036e-57
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DLQ+DPP  CS+ P
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGP 25

BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.036e-57
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 3

Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P+ +D+FHWQATIMGPPDS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR
Sbjct:   25 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAR 139

HSP 2 Score: 38.5058 bits (88), Expect = 5.036e-57
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query:   31 MASKRILKELKDLQKDPPTSCSSRP 105
            MA KRI KEL DLQ+DPP  CS+ P
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGP 25

The following BLAST results are available for this feature:

BLAST of CF504397 vs. ExPASy Swiss-Prot

BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262


Match Name	E-value	Identity	Description
UBC2_CAEEL	7.864e-58	80.00	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi...	[more]
UB2D3_RAT	1.743e-57	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve...	[more]
UB2D3_PONAB	1.743e-57	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]
UB2D3_MOUSE	1.743e-57	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	1.743e-57	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	1.743e-57	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]
UB2D2_PIG	1.743e-57	80.87	Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G...	[more]
UB2D1_MOUSE	5.036e-57	76.52	Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus...	[more]
UB2D1_HUMAN	5.036e-57	76.52	Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens...	[more]
UB2D1_BOVIN	5.036e-57	76.52	Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG