CF504416

Overview
NameCF504416
Unique NameCF504416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length265
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.866e-32
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            R+YRAPELIFGAT+YT+SID+WSAGCVLAELLLGQP+FPG++ VDQLVEIIK LGTPTRE+IR MNPNYT+F
Sbjct:  220 RYYRAPELIFGATDYTSSIDMWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEF 291          

HSP 2 Score: 29.261 bits (64), Expect = 1.866e-32
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            KQL+ GE N+SYICS +
Sbjct:  205 KQLVRGEPNVSYICSRY 221          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.985e-31
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            R+YRAPELIFGA  YTT ID+WSAGCVLAELLLGQP+FPG++ VDQLVE+IK LGTPTRE+IR MNPNYT+F
Sbjct:  771 RYYRAPELIFGAINYTTKIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEVIKVLGTPTREQIREMNPNYTEF 842          

HSP 2 Score: 28.4906 bits (62), Expect = 1.985e-31
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            KQL+ GE N+SYICS +
Sbjct:  756 KQLLHGEPNVSYICSRY 772          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.372e-29
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            R+YRAPELIFGATEYT++ID+WS GCV+AEL LG PLFPGE +VDQLVEIIK LGTP REEI+ MNP Y DF
Sbjct:  266 RYYRAPELIFGATEYTSAIDMWSVGCVMAELFLGHPLFPGETSVDQLVEIIKILGTPAREEIKNMNPRYNDF 337          

HSP 2 Score: 28.1054 bits (61), Expect = 1.372e-29
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            K LI GE NISYICS +
Sbjct:  251 KMLIPGEPNISYICSRY 267          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.175e-29
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 3
Query:   12 LLEKQTYHTYV-HRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            L++ +T  +Y+  R YRAPELIFG+T YTT+ID+WS GCVLAELLLGQPLFPGEN +DQLVEIIK LGTPT+E+I  MNP YT F
Sbjct:  205 LIKGETNVSYICSRHYRAPELIFGSTNYTTTIDVWSLGCVLAELLLGQPLFPGENGIDQLVEIIKVLGTPTKEQIHAMNPYYTSF 289          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 8.717e-29
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTD 260
            R+YRAPELIFGAT+YT +IDIWS GCV+AEL+LG PLFPGE+ +DQLVEIIK LGTP+RE+I+ MNPNY +
Sbjct:  196 RYYRAPELIFGATDYTHAIDIWSTGCVMAELMLGHPLFPGESGIDQLVEIIKILGTPSREQIKTMNPNYME 266          

HSP 2 Score: 28.1054 bits (61), Expect = 8.717e-29
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            K L+AGE N+SYICS +
Sbjct:  181 KILVAGEPNVSYICSRY 197          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.727e-29
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            R+YRAPELIFGAT YT SID+WSAG V+AELLLGQP+FPG++ VDQLVEIIK LGTPTRE+I+ MNPNY +F
Sbjct:  200 RYYRAPELIFGATNYTNSIDVWSAGTVMAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIQSMNPNYKEF 271          

HSP 2 Score: 24.6386 bits (52), Expect = 8.727e-29
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            K L+  E N+SYICS +
Sbjct:  185 KYLVRNEPNVSYICSRY 201          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK3_CAEBR (Glycogen synthase kinase-3 OS=Caenorhabditis briggsae GN=gsk-3 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.728e-29
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            R+YRAPELIFGAT YT SID+WSAG V+AELLLGQP+FPG++ VDQLVEIIK LGTPTRE+I+ MNPNY +F
Sbjct:  200 RYYRAPELIFGATNYTNSIDVWSAGTVIAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIQSMNPNYKEF 271          

HSP 2 Score: 24.6386 bits (52), Expect = 8.728e-29
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            K L+  E N+SYICS +
Sbjct:  185 KYLVRNEPNVSYICSRY 201          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.678e-27
Identity = 48/72 (66.67%), Postives = 63/72 (87.50%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTDF 263
            R+YRAPELIFG+T+YTT ID+WSAGCV++ELLLGQ +FPG++ VDQ+VEI+K +GTPT E++  MNP+Y  F
Sbjct:  197 RYYRAPELIFGSTDYTTKIDMWSAGCVMSELLLGQLIFPGDSGVDQIVEIVKVMGTPTSEQLHDMNPHYKQF 268          

HSP 2 Score: 30.4166 bits (67), Expect = 2.678e-27
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            KQLI+GE N+SYICS +
Sbjct:  182 KQLISGEPNVSYICSRY 198          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: MDS1_YEAST (Serine/threonine-protein kinase MDS1/RIM11 OS=Saccharomyces cerevisiae GN=MDS1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.504e-27
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTD 260
            R+YRAPELIFGAT YT  IDIWS+GCV+AELLLGQP+FPGE+ +DQLVEIIK LGTP+++EI  MNPNY +
Sbjct:  203 RYYRAPELIFGATNYTNQIDIWSSGCVMAELLLGQPMFPGESGIDQLVEIIKILGTPSKQEICSMNPNYME 273          

HSP 2 Score: 23.8682 bits (50), Expect = 3.504e-27
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            KQL   E N+SYICS +
Sbjct:  188 KQLKPTEPNVSYICSRY 204          
BLAST of CF504416 vs. ExPASy Swiss-Prot
Match: GSK31_SCHPO (Protein kinase gsk31 OS=Schizosaccharomyces pombe GN=gsk31 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.027e-25
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 3
Query:   48 RFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKGLGTPTREEIRCMNPNYTD 260
            R+YRAPEL+FGAT YTT ID+WSA CV+AEL +G+PLFPG+++V+QLVEII+ LGTP+  EI  MNPNY +
Sbjct:  189 RYYRAPELVFGATHYTTKIDVWSAACVIAELFIGRPLFPGDSSVEQLVEIIRVLGTPSYHEISVMNPNYVN 259          

HSP 2 Score: 24.2534 bits (51), Expect = 4.027e-25
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    2 KQLIAGEANISYICSPF 52
            K L+  E N+SYICS +
Sbjct:  174 KVLVPSEPNVSYICSRY 190          
The following BLAST results are available for this feature:
BLAST of CF504416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 404
Match NameE-valueIdentityDescription
GSK3B_RAT1.866e-3283.33Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
SGG_DROME1.985e-3180.56Protein kinase shaggy OS=Drosophila melanogaster G... [more]
KSG2_ARATH1.372e-2977.78Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
GSK3_DICDI6.175e-2970.59Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3_SCHPO8.717e-2974.65Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
GSK3_CAEEL8.727e-2977.78Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
GSK3_CAEBR8.728e-2977.78Glycogen synthase kinase-3 OS=Caenorhabditis brigg... [more]
GSK3H_DROME2.678e-2766.67Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
MDS1_YEAST3.504e-2774.65Serine/threonine-protein kinase MDS1/RIM11 OS=Sacc... [more]
GSK31_SCHPO4.027e-2567.61Protein kinase gsk31 OS=Schizosaccharomyces pombe ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-905 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504416 ID=CF504416; Name=CF504416; organism=Citrus sinensis; type=EST; length=265bp
AAAACAGCTGATTGCTGGAGAAGCAAACATATCATACATATGTTCACCGT
TTCTATCGGGCTCCAGAACTTATATTTGGAGCTACAGAATATACAACCTC
CATTGATATATGGTCAGCTGGTTGTGTGCTTGCCGAGCTTCTTTTGGGCC
AGCCATTATTTCCTGGAGAAAATGCAGTGGACCAGCTTGTAGAGATTATC
AAGGGTCTCGGTACACCCACTCGTGAAGAAATTCGCTGTATGAATCCAAA
TTATACCGATTTTAG
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