CF504445

Overview
NameCF504445
Unique NameCF504445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length201
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.050e-13
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPA 140
            GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++P+
Sbjct:   72 GNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS 117          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.793e-12
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGR 200
            G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGR
Sbjct:  126 GSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGR 192          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 2.342e-12
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGR 200
            G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGR
Sbjct:  123 GGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGR 189          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++   A+            PG +YYGR
Sbjct:   71 GSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGR 137          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.218e-12
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++   +S            PG +YYGR
Sbjct:   71 GSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGR 137          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.900e-12
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG +Y+GR
Sbjct:   51 GDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGR 117          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.900e-12
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGR 200
            G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++   +S           P  +Y+GR
Sbjct:  132 GDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGR 198          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.518e-11
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 3
Query:   18 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS 146
            RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++P SS
Sbjct:  100 RKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSS 142          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.983e-11
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGR 200
            G++  +K+E+AAF AQT HETTGGW  AP G YAWGYC++ + +                 +YYGR
Sbjct:  126 GDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGR 191          
BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.983e-11
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 3
Query:    3 GNETMRKREIAAFFAQTGHETTG--GWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGR 200
            G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYCY R+++PA               QY+GR
Sbjct:  118 GDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGR 184          
The following BLAST results are available for this feature:
BLAST of CF504445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI11_ORYSJ8.050e-1358.70Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SECCE1.793e-1249.25Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU2.342e-1249.2526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE3.995e-1247.76Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU5.218e-1247.7626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHID_SOLLC8.900e-1247.76Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI9_ORYSJ8.900e-1244.78Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI10_ORYSJ1.518e-1165.12Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIX_PEA1.983e-1143.94Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_THECC1.983e-1150.00Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-934 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504445 ID=CF504445; Name=CF504445; organism=Citrus sinensis; type=EST; length=201bp
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACT
ACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGA
G
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