CF504445

Overview
NameCF504445
Unique NameCF504445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length201
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504445 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.769e-11
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 3 
Query:    3 GNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCY 119
            G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+
Sbjct:  125 GDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCF 163
The following BLAST results are available for this feature:
BLAST of CF504445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHI1_ORYSJ5.769e-1166.67Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-934 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504445 ID=CF504445; Name=CF504445; organism=Citrus sinensis; type=EST; length=201bp
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACT
ACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGA
G
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