CF504464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11 Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 D+ ++ +S+P + H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11 Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90 GHT V+ + + DN Q SAS DRTIK+W Sbjct: 140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11 Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 D+ ++ +S+P + H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11 Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90 GHT V+ + + DN Q SAS DRTIK+W Sbjct: 140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11 Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 D+ ++ +S+P + H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11 Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90 GHT V+ + + DN Q SAS DRTIK+W Sbjct: 140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11 Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 D+ ++ +S+P + H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11 Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90 GHT V+ + + DN Q SAS DRTIK+W Sbjct: 140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3) HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11 Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3 Query: 78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 D+ ++ +S+P + H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256 HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11 Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 Query: 1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90 GHT V+ + + DN Q SAS DRTIK+W Sbjct: 140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2) HSP 1 Score: 51.6026 bits (122), Expect = 9.765e-11 Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 3 Query: 192 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356 +VS S D T+KVW++ KL L GH V V SPDG ASGGKD + +W Sbjct: 429 LVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483 HSP 2 Score: 33.8834 bits (76), Expect = 9.765e-11 Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 1 Query: 1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93 GH + V FS D+R I SAS D++IKLW+ Sbjct: 370 GHQALINQVVFSPDSRVIASASFDKSIKLWD 400 The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bpback to top |