CF504464

Overview
NameCF504464
Unique NameCF504464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11
Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            D+ ++     +S+P    + H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90
            GHT  V+ +  +  DN Q  SAS DRTIK+W
Sbjct:  140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11
Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            D+ ++     +S+P    + H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90
            GHT  V+ +  +  DN Q  SAS DRTIK+W
Sbjct:  140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11
Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            D+ ++     +S+P    + H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90
            GHT  V+ +  +  DN Q  SAS DRTIK+W
Sbjct:  140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11
Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            D+ ++     +S+P    + H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90
            GHT  V+ +  +  DN Q  SAS DRTIK+W
Sbjct:  140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3)

HSP 1 Score: 52.373 bits (124), Expect = 9.601e-11
Identity = 24/93 (25.81%), Postives = 48/93 (51.61%), Query Frame = 3
Query:   78 DQVVEHRSASASTPIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            D+ ++     +S+P    + H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  164 DRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          

HSP 2 Score: 33.113 bits (74), Expect = 9.601e-11
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1
Query:    1 GHTKDVLSVAFSI-DNRQIVSASRDRTIKLW 90
            GHT  V+ +  +  DN Q  SAS DRTIK+W
Sbjct:  140 GHTHYVMQIVINPKDNNQFASASLDRTIKVW 170          
BLAST of CF504464 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 9.765e-11
Identity = 26/55 (47.27%), Postives = 32/55 (58.18%), Query Frame = 3
Query:  192 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 356
            +VS S D T+KVW++   KL   L GH   V  V  SPDG   ASGGKD  + +W
Sbjct:  429 LVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 33.8834 bits (76), Expect = 9.765e-11
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 1
Query:    1 GHTKDVLSVAFSIDNRQIVSASRDRTIKLWN 93
            GH   +  V FS D+R I SAS D++IKLW+
Sbjct:  370 GHQALINQVVFSPDSRVIASASFDKSIKLWD 400          
The following BLAST results are available for this feature:
BLAST of CF504464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
COPB2_PONAB9.601e-1125.81Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]
COPB2_MOUSE9.601e-1125.81Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_MACFA9.601e-1125.81Coatomer subunit beta' OS=Macaca fascicularis GN=C... [more]
COPB2_HUMAN9.601e-1125.81Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]
COPB2_BOVIN9.601e-1125.81Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1... [more]
NLE1_BOVIN9.765e-1147.27Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-953 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504464 ID=CF504464; Name=CF504464; organism=Citrus sinensis; type=EST; length=384bp
GGCCACACTAAGGACGTTCTCTCCGTCGCCTTCTCGATCGACAACCGTCA
GATTGTATCGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACCGCTC
GGCGAGTGCAAGTACACCGATTCAAGAGGGAGACGCTCACACTGAGTGGG
TTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCC
GCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCT
TAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGT
CGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTG
TTGTGGGATTTGGCTGAGGGAAAAAGACTCTACT
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