CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKSA++   TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 161
            SSACVLFILDEMRK S+     TTGEGL+WGVLFGFGPGLT+ETVVLHSVPIK
Sbjct:  337 SSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMR+KSAE    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRRKSAENGHKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS ++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRKKSTKDGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 155
            SSACVLFILDEMR  SA++   TTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  338 SSACVLFILDEMRNASAKDGHRTTGEGLDWGVLFGFGPGLTVETVVLHSVP 388          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKSA+    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRKKSAQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMR+KSAE+   TTGEGLDWGVLFGFGPGLTVETVVLHS+
Sbjct:  338 SSACVLFILDEMRRKSAEKGLKTTGEGLDWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.500e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S++E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.500e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S++E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.500e-19
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKS +    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDEMRKKSVQAGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS1_TRISU3.367e-1984.62Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS1_IPOBA3.367e-1983.02Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS7_SOYBN4.397e-1984.62Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]
CHS3_TRISU4.397e-1984.62Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS9_DAUCA5.743e-1986.27Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS2_TRISU5.743e-1984.62Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS1_CASGL5.743e-1988.00Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHS2_SOLTU7.500e-1988.00Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS2_SOLLC7.500e-1988.00Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHS1_MEDSA7.500e-1984.62Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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