CF504474

Overview
NameCF504474
Unique NameCF504474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length302
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.182e-18
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFI+DEMRK SAEE   TTGEGL+WGVLFGFGPGLTVETVVLH V
Sbjct:  338 SSACVLFIMDEMRKNSAEEGLMTTGEGLEWGVLFGFGPGLTVETVVLHGV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.182e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRK SA +  +TTGEGL+WGVLFGFGPGLTVETVVLHSV +
Sbjct:  338 SSACVLFILDEMRKASARDGLSTTGEGLEWGVLFGFGPGLTVETVVLHSVNV 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: BBS_PHASS (Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.182e-18
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SS CV F LDEMRK+SA E KATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  339 SSVCVHFALDEMRKRSANEGKATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 390          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S++E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASSKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSA_PEA (Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMR+KS E+  ATTGEGL+WGVLFGFGPGLTVETV+LHS+
Sbjct:  338 SSACVLFILDEMRRKSKEDGLATTGEGLEWGVLFGFGPGLTVETVLLHSM 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKSA++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  214 SSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVTI 265          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILDEMRKKSA++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  338 SSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 158
            SSACVLFILD+MRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  338 SSACVLFILDQMRKKSTQDGLNTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.850e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRKKSA +   TTGEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  338 SSACVLFILDEMRKKSAADGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CF504474 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.722e-18
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 SSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 152
            SSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  338 SSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
The following BLAST results are available for this feature:
BLAST of CF504474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHSY_HYDMC2.182e-1886.00Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHSY_CATRO2.182e-1882.69Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
BBS_PHASS2.182e-1882.69Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 ... [more]
CHSJ_PETHY2.850e-1886.00Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHSA_PEA2.850e-1884.00Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE... [more]
CHS7_MEDSA2.850e-1882.69Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHS5_MEDSA2.850e-1882.69Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
CHS1_PEA2.850e-1880.77Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]
CHS1_CAMSI2.850e-1886.00Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHSB_SOLTU3.722e-1886.00Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-963 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504474 ID=CF504474; Name=CF504474; organism=Citrus sinensis; type=EST; length=302bp
TGTCAAGCGCTTGTGTCCTGTTCATCCTTGACGAGATGAGAAAGAAGTCT
GCTGAGGAAGCGAAAGCCACCACCGGCGAAGGGCTAGATTGGGGTGTGCT
GTTCGGGTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTG
TCCCCATCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCA
GTAACTTTATGTTGTATGCTTTCACTCTTGAATTATTGGTTGATCGTGTG
AAGGTTTAGTTTTGTCAATTGAATTTAAGGCATCGTAAAAAAAAAAAAAA
AA
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