CF504485

Overview
NameCF504485
Unique NameCF504485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.797e-27
Identity = 58/115 (50.43%), Postives = 84/115 (73.04%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQ 347
            NK   +W R+  +IT EEY  FYK +++D G  P   +H  VEG+ E+ ++L+VP +APFD+++ R+K + +KL+V+RVFIMD+ E+ +P YL FVKG+ DS DLPLN+SRE LQ
Sbjct:  253 NKATALWTREKADITDEEYKEFYKHVSHDFGD-PLLWEHNRVEGKTEYTSLLYVPTKAPFDMYN-REKQHGLKLFVQRVFIMDDAEQFMPTYLRFVKGLLDSNDLPLNVSREILQ 365          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.797e-27
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            N    +W R   +I++E+Y  FYK + +D   AP    H  VEG+ E+  +L++P RAPFDL+D R++   +KLYVRRVFIM++ E+L+P YL FV+G+ DS DLPLN+SRE LQ+
Sbjct:  231 NSASALWTRSKNDISEEQYQEFYKHVAHDFT-APLAWSHARVEGRQEYTELLYIPSRAPFDLYD-RERKQGVKLYVRRVFIMEDTEKLMPHYLRFVRGVIDSNDLPLNVSREILQE 344          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_NITOC (Chaperone protein htpG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.572e-27
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQ 347
            NK   +W     +I +EEY AFYK + +D    P    H  VEG+LE+ ++LF+P RAPFDL++ R +   IKLYV+RVFIMD+ E+L+P YL FV+G+ DS DLPLNISRE LQ
Sbjct:  234 NKATALWTLPKNDIKEEEYQAFYKHVAHDFED-PLAWTHNRVEGKLEYTSLLFIPPRAPFDLWE-RDRTQGIKLYVQRVFIMDDTEQLMPRYLRFVRGVVDSNDLPLNISREILQ 346          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_ACISJ (Chaperone protein htpG OS=Acidovorax sp. (strain JS42) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.572e-27
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            NK   +W R  ++IT E+Y  FYKS+++D    P    H  VEG  E+  +L++P +APFDL++  KK   +KLYV+RVFIMD+ E L+P YL FVKG+ DS DLPLN+SRE LQ+
Sbjct:  236 NKASALWTRPKKDITDEQYQDFYKSISHDFEN-PLTWSHNRVEGNTEYTQLLYIPAKAPFDLWNRDKKAG-VKLYVKRVFIMDDAESLMPSYLRFVKGVIDSADLPLNVSRELLQE 349          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_BDEBA (Chaperone protein htpG OS=Bdellovibrio bacteriovorus GN=htpG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.889e-27
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            N QK +W++ P E+TKEEY  FY+ LT+D    P    H+  EG +EF A+L+VP + P++ ++ R     + LY++RVFIM +C++L+P YL FVKG+ DS DL LN+SRE LQQ
Sbjct:  222 NSQKALWLKSPSEVTKEEYKEFYQHLTHDWN-EPLRTVHYRAEGTMEFNALLYVPGKKPWN-YNMRDMEYGLSLYIKRVFIMADCKDLLPPYLRFVKGLVDSSDLSLNVSRELLQQ 335          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.292e-26
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            N+   IW R   EIT+E+Y  FYK + +D    P    H  VEG+ E+  +L++P  APFDLFD R+  + +KLYVRRVFIMD+ E+L+P YL FV+GI DS DLPLN+SRE LQ+
Sbjct:  235 NQASAIWARPKNEITQEQYDEFYKHVAHDFE-PPLAHVHARVEGKQEYIQLLYIPAHAPFDLFD-REHRHGLKLYVRRVFIMDDAEKLLPGYLRFVRGIIDSSDLPLNVSREILQE 348          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSA (Chaperone protein htpG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=htpG PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.292e-26
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQ 347
            N    +W R   EIT E+Y  FY  + +     PW   H+  EG +E+  +LF+P   P D+F   +K  ++KLYVRRVFI D+CEEL+P YL FV+G+ DS+DLPLN+SRE LQ
Sbjct:  218 NSASALWTRSKSEITPEQYKEFYHHVAHAFD-EPWSTLHYKAEGAIEYTGLLFIPSSKPLDIFHPDRK-QHVKLYVRRVFITDDCEELLPPYLRFVRGVVDSQDLPLNVSREMLQ 330          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_RALEJ (Chaperone protein htpG OS=Ralstonia eutropha (strain JMP134) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.687e-26
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            N+   +W R   +IT E+Y AFY+ + +D   AP    H  VEG+ E+  +L++P RAPFDL+D   K + +KLYV+RVFIMD+ E+L+P YL +VKG+ DS DLPLN+SRE LQ+
Sbjct:  233 NQASALWTRPKSDITDEQYIAFYQHIAHD-NEAPLSWTHNRVEGRSEYTQLLYIPARAPFDLWDRNHK-HGLKLYVKRVFIMDDAEQLLPSYLRWVKGVIDSADLPLNVSRELLQE 346          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_SACD2 (Chaperone protein htpG OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.203e-26
Identity = 54/116 (46.55%), Postives = 81/116 (69.83%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            N  K +W R   ++T EEY  FYK +++D    P    H  VEG+L++ +++++P +APFD+++ R+KP  +KLYV+R FIMD+ E+ +P YL F+KG+ DS DL LN+SRE LQQ
Sbjct:  235 NTAKALWARSRSDVTDEEYKEFYKHVSHDYTD-PLSWSHNRVEGKLDYTSLIYIPSKAPFDMYN-REKPRGVKLYVQRTFIMDDAEQFLPLYLRFIKGVVDSNDLSLNVSREILQQ 348          
BLAST of CF504485 vs. ExPASy Swiss-Prot
Match: HTPG_CHRSD (Chaperone protein htpG OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.203e-26
Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 3
Query:    3 NKQKPIWMRKPEEITKEEYAAFYKSLTNDLGGAPWPVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIGDSEDLPLNISRETLQQ 350
            N+   +W+R  EEI+ +EY AFYK + +D    P    H  VEG+LE+ ++L+VP RAPFDL+  R+    +KLYV+RVFIMD+ E+ +P YL F+KG+ DS+DL LN+SRE LQ+
Sbjct:  237 NEATALWVRPKEEISDDEYKAFYKHVAHDFSD-PLTWSHNKVEGKLEYTSLLYVPGRAPFDLYQ-REGVRGLKLYVQRVFIMDDAEQFLPLYLRFIKGVVDSKDLSLNVSRELLQK 350          
The following BLAST results are available for this feature:
BLAST of CF504485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
HTPG_COLP35.797e-2750.43Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
HTPG_CHRVO5.797e-2749.14Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_NITOC7.572e-2753.04Chaperone protein htpG OS=Nitrosococcus oceani (st... [more]
HTPG_ACISJ7.572e-2750.86Chaperone protein htpG OS=Acidovorax sp. (strain J... [more]
HTPG_BDEBA9.889e-2748.28Chaperone protein htpG OS=Bdellovibrio bacteriovor... [more]
HTPG_NITEU1.292e-2652.59Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
HTPG_MAGSA1.292e-2647.83Chaperone protein htpG OS=Magnetospirillum magneti... [more]
HTPG_RALEJ1.687e-2650.00Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_SACD22.203e-2646.55Chaperone protein htpG OS=Saccharophagus degradans... [more]
HTPG_CHRSD2.203e-2650.00Chaperone protein htpG OS=Chromohalobacter salexig... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-974 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504485 ID=CF504485; Name=CF504485; organism=Citrus sinensis; type=EST; length=351bp
TGAACAAGCAGAAACCCATTTGGATGAGGAAACCTGAGGAGATTACAAAA
GAAGAGTATGCTGCCTTCTACAAGAGTCTGACTAATGACCTGGGAGGAGC
ACCTTGGCCTGTGAAGCACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGG
CTATCCTCTTTGTTCCCAAGAGGGCACCTTTTGATCTCTTTGACACAAGG
AAGAAGCCCAATAATATCAAGCTCTACGTCCGCCGTGTCTTCATCATGGA
CAACTGTGAGGAGTTGATCCCCGAATACCTTGGTTTTGTTAAGGGTATTG
GTGATTCCGAGGATCTCCCTCTTAACATCTCAAGAGAAACACTCCAGCAG
A
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