CF504529

Overview
NameCF504529
Unique NameCF504529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.236e-28
Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDE-DGFLYMTYSGENTFG 359
            ESA +   YPDRIPVIVEK  RS++P+++K+KYLVP ++ VGQF++++R R+ LS   A+F+FV N LP TA +M ++YE  KDE DGFLY+ YS E TFG
Sbjct:   18 ESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.365e-26
Identity = 55/104 (52.88%), Postives = 82/104 (78.85%), Query Frame = 3
Query:   63 SARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS---AEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 362
            S++IR +Y DR+P+IVE+A  SD+PDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP++ ++S+IY+ +KDEDGFLY+ YSGENTFG+
Sbjct:   21 SSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGS 124          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.472e-20
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSD-IPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-ILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E A IR K+P++IPV+VE+  R   +P +DK K+LVP +LT+ QF+ ++R R+ L A +A ++ V N  L   +A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct:   25 EVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 5.746e-17
Identity = 42/105 (40.00%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  R IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  KDEDGFLYM Y+ + TFG
Sbjct:   16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 41/107 (38.32%), Postives = 71/107 (66.36%), Query Frame = 3
Query:   54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 365
            R E  R IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  +DEDGFLYM Y+ + TFG +
Sbjct:   16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTA 122          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 41/107 (38.32%), Postives = 71/107 (66.36%), Query Frame = 3
Query:   54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 365
            R E  R IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  +DEDGFLYM Y+ + TFG +
Sbjct:   16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTA 122          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 40/102 (39.22%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E  +IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:   19 EVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  R IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +  +YE  KDEDGFLYM Y+ + TFG
Sbjct:   16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16
Identity = 39/102 (38.24%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:   19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16
Identity = 39/102 (38.24%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:   19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
The following BLAST results are available for this feature:
BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8D_ORYSJ7.236e-2856.44Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8L_DICDI1.365e-2652.88Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3C_HUMAN9.472e-2047.06Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN5.746e-1740.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT9.802e-1738.32Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE9.802e-1738.32Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN9.802e-1739.22Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.184e-1639.05Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT2.184e-1638.24Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE2.184e-1638.24Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-018 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bp
AGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGA
GGCAGGCCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACC
AGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAA
AAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTG
GTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGT
CAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGG
AAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAAC
ACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAAC
TCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAA
CTGAGGGAGCACTTGGAAAGCAT
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