CF504529
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 7.236e-28 Identity = 57/101 (56.44%), Postives = 77/101 (76.24%), Query Frame = 3 Query: 60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDE-DGFLYMTYSGENTFG 359 ESA + YPDRIPVIVEK RS++P+++K+KYLVP ++ VGQF++++R R+ LS A+F+FV N LP TA +M ++YE KDE DGFLY+ YS E TFG Sbjct: 18 ESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.365e-26 Identity = 55/104 (52.88%), Postives = 82/104 (78.85%), Query Frame = 3 Query: 63 SARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLS---AEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 362 S++IR +Y DR+P+IVE+A SD+PDI+KKK+L P+++ + F+ +RK + S +KAIF+FV KN LPP++ ++S+IY+ +KDEDGFLY+ YSGENTFG+ Sbjct: 21 SSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGS 124
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 9.472e-20 Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 3 Query: 60 ESARIREKYPDRIPVIVEKAERSD-IPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-ILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 E A IR K+P++IPV+VE+ R +P +DK K+LVP +LT+ QF+ ++R R+ L A +A ++ V N L +A M+ IY + KDEDGF+YMTY+ + TFG Sbjct: 25 EVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 5.746e-17 Identity = 42/105 (40.00%), Postives = 70/105 (66.67%), Query Frame = 3 Query: 54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 R E R IRE++P +IPVI+E+ + +P +DK K+LVP + + + + ++R+R++L+A +A F+ V + + + +S +YE KDEDGFLYM Y+ + TFG Sbjct: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17 Identity = 41/107 (38.32%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 365 R E R IRE++P +IPVI+E+ + +P +DK K+LVP + + + + ++R+R++L+A +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG + Sbjct: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTA 122
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17 Identity = 41/107 (38.32%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 365 R E R IRE++P +IPVI+E+ + +P +DK K+LVP + + + + ++R+R++L+A +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG + Sbjct: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTA 122
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17 Identity = 40/102 (39.22%), Postives = 70/102 (68.63%), Query Frame = 3 Query: 60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 E +IRE++P +IPVI+E+ + +P +DK K+LVP + + + V ++R+R++L+ +A F+ V ++ + + ++ IYE+ KDEDGFLYM Y+ + TFG Sbjct: 19 EVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4) HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16 Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 3 Query: 54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 R E R IRE++P +IPVI+E+ + +P +DK K+LVP + + + + ++R+R++L+A +A F+ V + + + + +YE KDEDGFLYM Y+ + TFG Sbjct: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16 Identity = 39/102 (38.24%), Postives = 70/102 (68.63%), Query Frame = 3 Query: 60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 E +IR+++P +IPVI+E+ + +P +DK K+LVP + + + V ++R+R++L+ +A F+ V ++ + + ++ IYE+ KDEDGFLYM Y+ + TFG Sbjct: 19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16 Identity = 39/102 (38.24%), Postives = 70/102 (68.63%), Query Frame = 3 Query: 60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 E +IR+++P +IPVI+E+ + +P +DK K+LVP + + + V ++R+R++L+ +A F+ V ++ + + ++ IYE+ KDEDGFLYM Y+ + TFG Sbjct: 19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120 The following BLAST results are available for this feature:
BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bpback to top |