CF504529
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16 Identity = 39/102 (38.24%), Postives = 70/102 (68.63%), Query Frame = 3 Query: 60 ESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 E +IR+++P +IPVI+E+ + +P +DK K+LVP + + + V ++R+R++L+ +A F+ V ++ + + ++ IYE+ KDEDGFLYM Y+ + TFG Sbjct: 19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16 Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 3 Query: 54 RPESAR-IREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 R E R IRE++P +IPVI+E+ + +P +DK K+LVP + + + + ++R+R++L+A +A F+ V + + + +S +YE KDEDGFLYM + + TFG Sbjct: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.325e-13 Identity = 37/99 (37.37%), Postives = 66/99 (66.67%), Query Frame = 3 Query: 72 IREKYPDRIPVIVEK--AERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359 IR + P+++PVI+E+ ERS +P +D+ K+LVP +TV + + +VR+R++L ++A F+ V + + + MS +Y + +D DGF+YM Y+ + FG Sbjct: 33 IRSQQPNKVPVIIERFDGERS-LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130 The following BLAST results are available for this feature:
BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bpback to top |