CF504530

Overview
NameCF504530
Unique NameCF504530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +V EL+RKKQSDV+R+L RVRCW+YRQ   + R  RP+RPDKARRLGYKAKQ
Sbjct:    2 GAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.851e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +V+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    2 GAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.983e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +V E+ +KKQSDV+RFL RVRCWE RQ  +I R +RP+RPDKARRLGYKAKQ
Sbjct:    2 GALKYVEEIQKKKQSDVIRFLLRVRCWELRQLNAIHRASRPSRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ E+WRKKQSD +R+L R+R W YRQ  ++ RV RPTRP+KARRLGY+AKQ
Sbjct:    2 GAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    2 GALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  109 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            MRF+QRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 41          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.681e-15
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   +V EL+RKKQSDVMR+L R+R W+YRQ     R  RP+RPDKARRLGYKAKQ
Sbjct:    2 GAYRYVQELYRKKQSDVMRYLLRIRVWQYRQMTRFHRAPRPSRPDKARRLGYKAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ EL+RKKQSDVMR+L R+R W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct:    2 GAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQ 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ ELWRKK+S+ MR+L R+RCW+YRQ  +I RV+RPTRP+KARRLGY + +
Sbjct:    2 GAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNE 57          
BLAST of CF504530 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   58 GLTPFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 225
            G   ++ E++RKKQSDVMRFL R+R W+YR    + R  RPTRP+KARRLGYKAKQ
Sbjct:    2 GAYKYMQEIYRKKQSDVMRFLLRIRAWQYRHLNKLHRAPRPTRPEKARRLGYKAKQ 57          
The following BLAST results are available for this feature:
BLAST of CF504530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL15_CHITE6.011e-1667.8660S ribosomal protein L15 OS=Chironomus tentans GN... [more]
RL15_QUESU7.851e-1669.6460S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15_ASPNG2.983e-1567.8660S ribosomal protein L15 OS=Aspergillus niger GN=... [more]
RL15_CAEEL6.646e-1560.7160S ribosomal protein L15 OS=Caenorhabditis elegan... [more]
RL15_NEUCR8.681e-1567.8660S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15_BRANA8.681e-1589.7460S ribosomal protein L15 (Fragment) OS=Brassica n... [more]
RL15_ANOGA8.681e-1566.0760S ribosomal protein L15 OS=Anopheles gambiae GN=... [more]
RL15_DROME1.481e-1464.2960S ribosomal protein L15 OS=Drosophila melanogast... [more]
RL15_BRUPA1.934e-1458.9360S ribosomal protein L15 (Fragment) OS=Brugia pah... [more]
RL15_ORCLI2.526e-1462.5060S ribosomal protein L15 OS=Orconectes limosus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-019 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504530 ID=CF504530; Name=CF504530; organism=Citrus sinensis; type=EST; length=226bp
AAACCCTAGTCGCACGGATACTGCGCAGCTCAGCTCAGCTCAGCTCATAG
CCAATGGGGGCTTACACCGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGG
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