CF504544

Overview
NameCF504544
Unique NameCF504544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.764e-21
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_PHYPO (Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.764e-21
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRIS  IYEETRGVLK FLENVIRDAVTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISNTIYEETRGVLKTFLENVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_CHLRE (Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.764e-21
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_VOLCA (Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.715e-21
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTE
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_NEUCR (Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.042e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_ASPOR (Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.042e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H4_ASPFU (Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.042e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H42_PENFN (Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.042e-21
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H42_EMENI (Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.042e-21
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTE 75
[Close]
BLAST of CF504544 vs. ExPASy Swiss-Prot
Match: H41_PENFN (Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.042e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTE 297
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTE
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTE 75
The following BLAST results are available for this feature:
BLAST of CF504544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SCHPO2.764e-2190.74Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE... [more]
H4_PHYPO2.764e-2194.44Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV... [more]
H4_CHLRE2.764e-2194.44Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE... [more]
H4_VOLCA4.715e-2194.44Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2[more]
H4_NEUCR8.042e-2190.74Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2[more]
H4_ASPOR8.042e-2190.74Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3[more]
H4_ASPFU8.042e-2190.74Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 S... [more]
H42_PENFN8.042e-2190.74Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE... [more]
H42_EMENI8.042e-2190.74Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 S... [more]
H41_PENFN8.042e-2190.74Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-033 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504544 ID=CF504544; Name=CF504544; organism=Citrus sinensis; type=EST; length=299bp
GGCACATTCAAATTTCTCTATCCAAATTCTCTTTCAAGGAACAGCGGAAA
GTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGG
GATTGGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAAC
ATTCAGGGTATCACAAAGCCAGCAATCCGGCGTTTGGCTCGTAGAGGTGG
AGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGACACGTGGCGTCCTGA
AGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCA
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