CF504562

Overview
NameCF504562
Unique NameCF504562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.476e-24
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TF+M+KPDGVQR L+GEI++RFE+KG  L G KLM V    A +HY++ + KPFFG L+++ITSGPV AM+WEGE
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGE 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.845e-24
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 309
            ME+TF+M+KPDGVQR L+GEI+ RFE KG+ L G KLM V    AE HY +   +PFFG L+++ITSGPV AM+WEGE
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGE 78          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.302e-23
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEG
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_THET8 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ndk PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.701e-23
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+ +ITSGPVVAM+ EG G
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_THET2 (Nucleoside diphosphate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.701e-23
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TF+MIKPDGV+RGLVGEI+ RFE+KGF +  LKLM + +  AE+HY +   KPFF  L+ +ITSGPVVAM+ EG G
Sbjct:    1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMRISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.701e-23
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   79 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+ +ITSGPVVAM+WEG+G
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDG 80          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.701e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPV+AM+WEGEG
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.701e-23
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  A +HY     +PFF  L+++ITSGPV+AM+WEG+G
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDG 81          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.221e-23
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+TFI IKPDGVQRGLVGEI+ RFE++GF L GLKLM V    A+KHY +   +PFFG L+ +ITS PVVA++ EG+G
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKG 79          
BLAST of CF504562 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.221e-23
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   76 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 312
            ME+T++M+KPDGVQR L+G I+ RFE+KG++L   KL+T+ +  AE HY +   +PFFG L+ +ITSGPV AM+WEGEG
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGEG 79          
The following BLAST results are available for this feature:
BLAST of CF504562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACLD4.476e-2461.54Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]
NDK_OCEIH5.845e-2461.54Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_PROM11.302e-2362.03Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_THET81.701e-2362.03Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_THET21.701e-2362.03Nucleoside diphosphate kinase OS=Thermus thermophi... [more]
NDK_SYNS91.701e-2364.10Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMT1.701e-2360.76Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM1.701e-2362.03Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_GLOVI2.221e-2363.29Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_BACSK2.221e-2356.96Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-051 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504562 ID=CF504562; Name=CF504562; organism=Citrus sinensis; type=EST; length=312bp
CTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACAA
GTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCA
AGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTT
GAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCG
CCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTG
GTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGG
GAGGGTGAAGGT
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