CF504566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25 Identity = 57/147 (38.78%), Postives = 87/147 (59.18%), Query Frame = 2 Query: 140 STPMKVDSD---PLKRVPCSK-------PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 +TP+ VDS P++ P ++ PPF L+ ++ AIP HC+ ++ +S SYVV +L I F A Y++ ++L WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH N Sbjct: 24 TTPLTVDSSSSPPIEEEPKTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGA-AYLN------NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQN 163
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24 Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P + PPF ++ ++ AIP HC+E+S LRS SYV+ D+ + A ++ S+ WP+YW QG + ++V+ H+CGH +FS+ L+ VG ILHS +LVPY W+ SHR HH N Sbjct: 24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFN-------SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQN 139
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24 Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 2 Query: 194 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 PPFTL+ ++ AIP HC+ ++ RS SYV+ D+ + F +A Y + +++AWP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH N Sbjct: 108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVA-AYFN------NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN 219
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24 Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P + PPF L+ ++ AIP HC+ + RS SYVV D+ IA A Y++ ++L WP+YWA QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH + Sbjct: 98 PGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDV-IAVFGLAAAAAYLN------NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQH 213
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.359e-24 Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P + PPF L+ ++ AIP HC+ ++ +S SYVV D+ I F A Y++ +++ WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH N Sbjct: 90 PGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGA-AYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN 205
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23 Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 2 Query: 131 AVPSTPMKVDS--DPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 A P T ++ S D + P + PPF L+ ++ AIP HC+ ++ S SYVV D+ I F +A Y + ++L WP+YW QG + ++V+ H+CGH +FS+ L+ G +LHS +LVPY W+ SHR HH N Sbjct: 64 ATPLTTLQSPSEEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVA-AYFN------NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQN 198
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P + PPF LS +++AIP HC+ + RS YVV D+ + F +A Y + +++ WP+YW Q + ++V+ H+CGH +FS+ L+ VG ILHS +LVPY W+ SHR HH N Sbjct: 94 PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVA-AYFN------NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQN 209
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.117e-21 Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 2 Query: 182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550 P + PPF +++++ +IP HC+ ++ RS SYV+ D+ + A H ++L W +Y +QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SHR HH N Sbjct: 27 PSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAI-------HFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQN 142
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14 Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 2 Query: 137 PSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544 P TP S+P + + K L + K +P CFE+ ++++ V+ L V Y + YL W P+ W G LTG +VV H+CGH +F+ +W++D VG I + L+ P+ SW+ H HH Sbjct: 7 PLTPTVTPSNPDRPIADLK----LQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYL-----------GIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHH 130
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11 Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 2 Query: 368 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544 PV W G LTG +V+ H+CGH +FS W++D VG IL ++ P+ SW+ H +HH Sbjct: 71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHH 129 The following BLAST results are available for this feature:
BLAST of CF504566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504566 ID=CF504566; Name=CF504566; organism=Citrus sinensis; type=EST; length=552bpback to top |