CF504566

Overview
NameCF504566
Unique NameCF504566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 57/147 (38.78%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  140 STPMKVDSD---PLKRVPCSK-------PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            +TP+ VDS    P++  P ++       PPF L+ ++ AIP HC+ ++  +S SYVV +L I F     A  Y++      ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH N
Sbjct:   24 TTPLTVDSSSSPPIEEEPKTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGA-AYLN------NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQN 163          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P + PPF ++ ++ AIP HC+E+S LRS SYV+ D+ +       A ++        S+  WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG ILHS +LVPY  W+ SHR HH N
Sbjct:   24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFN-------SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQN 139          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  194 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            PPFTL+ ++ AIP HC+ ++  RS SYV+ D+ + F    +A  Y +      +++AWP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH N
Sbjct:  108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVA-AYFN------NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN 219          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P + PPF L+ ++ AIP HC+ +   RS SYVV D+ IA      A  Y++      ++L WP+YWA QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH +
Sbjct:   98 PGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDV-IAVFGLAAAAAYLN------NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQH 213          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.359e-24
Identity = 50/123 (40.65%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P + PPF L+ ++ AIP HC+ ++  +S SYVV D+ I F     A  Y++      +++ WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH N
Sbjct:   90 PGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGA-AYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN 205          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23
Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 2
Query:  131 AVPSTPMKVDS--DPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            A P T ++  S  D  +  P + PPF L+ ++ AIP HC+ ++   S SYVV D+ I F    +A  Y +      ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+   G +LHS +LVPY  W+ SHR HH N
Sbjct:   64 ATPLTTLQSPSEEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVA-AYFN------NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQN 198          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P + PPF LS +++AIP HC+ +   RS  YVV D+ + F    +A  Y +      +++ WP+YW  Q  +   ++V+ H+CGH +FS+   L+  VG ILHS +LVPY  W+ SHR HH N
Sbjct:   94 PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVA-AYFN------NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQN 209          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.117e-21
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  182 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSN 550
            P + PPF +++++ +IP HC+ ++  RS SYV+ D+ +       A        H  ++L W +Y  +QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N
Sbjct:   27 PSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAI-------HFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQN 142          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  137 PSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544
            P TP    S+P + +   K    L  + K +P  CFE+   ++++ V+  L    V Y             + YL W   P+ W   G  LTG +VV H+CGH +F+  +W++D VG I  + L+ P+ SW+  H  HH
Sbjct:    7 PLTPTVTPSNPDRPIADLK----LQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYL-----------GIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHH 130          
BLAST of CF504566 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  368 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHH 544
            PV W   G  LTG +V+ H+CGH +FS   W++D VG IL   ++ P+ SW+  H +HH
Sbjct:   71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHH 129          
The following BLAST results are available for this feature:
BLAST of CF504566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
FAD3C_BRANA8.268e-2538.78Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_PHAAU1.410e-2441.46Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO1.410e-2442.02Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SOYBN4.103e-2442.28Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_ARATH5.359e-2440.65Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH1.194e-2338.73Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SESIN1.194e-2340.65Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3E_SOYBN1.117e-2138.21Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
DESA_SYNY31.323e-1431.65Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL5.203e-1144.07Fatty acid desaturase OS=Spirulina platensis GN=de... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-055 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504566 ID=CF504566; Name=CF504566; organism=Citrus sinensis; type=EST; length=552bp
CTCACAACGCGGCCGGCGAAGGCGAGAAAGAGAGAGGGAGAGAAAGTGAG
GTCTCTCATTTTCTTCTTCTTTGCAGTCCAAGTGCTTCGCTTCTTCAGGT
TGACGAACAATGGGTGCAGGTGGACGAATGGCTGTACCTTCAACGCCCAT
GAAGGTGGATTCTGATCCCTTGAAGCGAGTTCCATGCTCAAAGCCACCAT
TCACACTCAGCCAAGTAAAGAAAGCTATCCCACCTCACTGTTTTGAGCGG
TCTGTTCTCCGTTCATTCTCCTACGTTGTTCATGACCTCACCATTGCCTT
TGTCTTTTACTACATTGCCGACACTTACATTCACCAACTTCCTCACCCTC
TCTCTTATCTGGCCTGGCCAGTTTACTGGGCTCTTCAAGGCTGCATTTTA
ACTGGAGTTTGGGTTGTAGCTCATGAATGTGGCCACCATGCCTTCAGTGA
CTATCAATGGCTTGACGACACTGTTGGCCTTATCCTCCACTCTTGCCTCC
TTGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCCATCACTCCAAT
AC
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