CF504605 | Citrus Genome Database

Overview


Name	CF504605
Unique Name	CF504605
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	431

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAAE (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain Newman) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAAC (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain COL) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAAB (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAA9 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain JH9) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAA8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain NCTC 8325) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAA3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain USA300) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAA2 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain JH1) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_STAA1 (Phosphoenolpyruvate carboxykinase [ATP] OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=pckA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.057e-36
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LS+EKEP I++AIK+GA+LEN V  E    VD+ D   TENTRAAYPI +I N  +P    HP  +I L  DAFGV+PP+SKLN  Q MYHF+SG+T+ L
Sbjct:  278 INLSKEKEPQIFDAIKYGAILENTVVAEDG-SVDFEDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKDQAMYHFLSGFTSKL 378

HSP 2 Score: 51.6026 bits (122), Expect = 2.057e-36
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKH 427
            AGTE G+ EP  +FS CFGA F  LHPT YA +L E +  H
Sbjct:  379 AGTERGVTEPEPSFSTCFGAPFFPLHPTVYADLLGELIDLH 419

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_PORGI (Phosphoenolpyruvate carboxykinase [ATP] OS=Porphyromonas gingivalis GN=pckA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.679e-36
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LSRE EPDI+NAI+  A+LENV  D    ++D+ DKSVTENTR +YPI +I N   P     H K VI L+ DAFGVLPPVS L   QT Y+F+SG+TA L
Sbjct:  285 INLSRENEPDIYNAIRRNALLENVTVDA-AGKIDFGDKSVTENTRVSYPIYHIENIVKPVSKAGHAKKVIFLSADAFGVLPPVSILTPEQTKYYFLSGFTAKL 386

HSP 2 Score: 63.929 bits (154), Expect = 2.679e-36
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 430
            AGTE GI EPT TFSACFGAAF+ LHPTKYA  L +KM+  G
Sbjct:  387 AGTERGITEPTPTFSACFGAAFLSLHPTKYAEELVKKMEMVG 428

BLAST of CF504605 vs. ExPASy Swiss-Prot
Match: PCKA_PORG3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=pckA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.679e-36
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 3

Query:    3 IDLSREKEPDIWNAIKFGAVLENVVFDEHTREVDYSDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALL 308
            I+LSRE EPDI+NAI+  A+LENV  D    ++D+ DKSVTENTR +YPI +I N   P     H K VI L+ DAFGVLPPVS L   QT Y+F+SG+TA L
Sbjct:  285 INLSRENEPDIYNAIRRNALLENVTVDA-AGKIDFGDKSVTENTRVSYPIYHIENIVKPVSKAGHAKKVIFLSADAFGVLPPVSILTPEQTKYYFLSGFTAKL 386

HSP 2 Score: 63.929 bits (154), Expect = 2.679e-36
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 2

Query:  305 AGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHG 430
            AGTE GI EPT TFSACFGAAF+ LHPTKYA  L +KM+  G
Sbjct:  387 AGTERGITEPTPTFSACFGAAFLSLHPTKYAEELVKKMEMVG 428

The following BLAST results are available for this feature:

BLAST of CF504605 vs. ExPASy Swiss-Prot

BLAST of CF504605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284


Match Name	E-value	Identity	Description
PCKA_STAAE	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAAC	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAAB	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAA9	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAA8	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAA3	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAA2	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_STAA1	2.057e-36	56.86	Phosphoenolpyruvate carboxykinase [ATP] OS=Staphyl...	[more]
PCKA_PORGI	2.679e-36	57.28	Phosphoenolpyruvate carboxykinase [ATP] OS=Porphyr...	[more]
PCKA_PORG3	2.679e-36	57.28	Phosphoenolpyruvate carboxykinase [ATP] OS=Porphyr...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-094 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_C03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504605 ID=CF504605; Name=CF504605; organism=Citrus sinensis; type=EST; length=431bp
GCATTGATCTCTCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAG
TTTGGCGCTGTGTTGGAAAATGTCGTGTTTGATGAGCATACCAGAGAGGT
GGATTATTCTGACAAATCTGTCACAGAGAACACTCGTGCTGCCTACCCCA
TTGAGTATATCCCCAATGCAAAGATACCATGCGTTGGTCCTCATCCCAAG
AATGTCATCCTTTTGGCATGTGATGCTTTTGGTGTACTCCCACCAGTGAG
CAAGCTGAACCTGGCACAAACAATGTACCATTTCATCAGTGGCTACACTG
CTTTGCTGGAACAGAGGATGGTATTAAGGAGCCAACGGCAACATTTTCAG
CTTGCTTTGGTGCAGCATTTATCATGCTGCATCCTACCAAGTATGCAGCA
ATGCTGGCTGAGAAGATGCAGAAGCATGGTG