CF504624

Overview
NameCF504624
Unique NameCF504624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KIN82_YEAST (Probable serine/threonine-protein kinase KIN82 OS=Saccharomyces cerevisiae GN=KIN82 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            + FE ++++GQG   KVY +R   T +I+A+KV+ K +++++   + + +E+ IL   DHPFIV L +SFQ   YLY
Sbjct:  322 QSFEKIRLLGQGDVGKVYLMRERDTNQIFALKVLNKHEMIKRKKIKRVLTEQEILATSDHPFIVTLYHSFQTKDYLY 398          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: MRCKG_HUMAN (Serine/threonine-protein kinase MRCK gamma OS=Homo sapiens GN=CDC42BPG PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 31/77 (40.26%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   98 EDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            +DFE+LKV+G+GAF +V  VR+  T +I+AMK++ K +++++      + ER++L K D  ++  L Y+FQ   YLY
Sbjct:   69 DDFEILKVIGRGAFGEVTVVRQRDTGQIFAMKMLHKWEMLKRAETACFREERDVLVKGDSRWVTTLHYAFQDEEYLY 145          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: KS6A4_HUMAN (Ribosomal protein S6 kinase alpha-4 OS=Homo sapiens GN=RPS6KA4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   65 NLPSENECVGLEDFEVLKVVGQGAFAKVYQVRRIG---TLEIYAMKVMRKDKIMEK-NHAEYMKSERNILTKV-DHPFIVQLRYSFQVMSYLYHT*DVLS 349
            NL    E V +E+FE+LKV+G GA+ KV+ VR+ G     ++YAMKV+RK  ++++    E+ ++ER++L  V   PF+V L Y+FQ  + L+   D +S
Sbjct:   20 NLTGHEEKVSVENFELLKVLGTGAYGKVFLVRKAGGHDAGKLYAMKVLRKAALVQRAKTQEHTRTERSVLELVRQAPFLVTLHYAFQTDAKLHLILDYVS 119          
BLAST of CF504624 vs. ExPASy Swiss-Prot
Match: CBK1_YARLI (Serine/threonine-protein kinase CBK1 OS=Yarrowia lipolytica GN=CBK1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   89 VGLEDFEVLKVVGQGAFAKVYQVRRIGTLEIYAMKVMRKDKIMEKNHAEYMKSERNILTKVDHPFIVQLRYSFQVMSYLY 328
            + LEDF  +KV+G+GAF +V  V++    +IYAMK M K ++  K    ++K+ER++L   D P+IV L +SFQ   YLY
Sbjct:  202 MALEDFVTVKVIGKGAFGEVRLVQKRDNGKIYAMKTMLKKEMDMKEQWAHVKAERDVLADSDSPWIVSLYFSFQDDLYLY 281          
The following BLAST results are available for this feature:
BLAST of CF504624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
KIN82_YEAST7.209e-1140.26Probable serine/threonine-protein kinase KIN82 OS=... [more]
MRCKG_HUMAN9.416e-1140.26Serine/threonine-protein kinase MRCK gamma OS=Homo... [more]
KS6A4_HUMAN9.416e-1140.00Ribosomal protein S6 kinase alpha-4 OS=Homo sapien... [more]
CBK1_YARLI9.416e-1143.75Serine/threonine-protein kinase CBK1 OS=Yarrowia l... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-113 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504624 ID=CF504624; Name=CF504624; organism=Citrus sinensis; type=EST; length=643bp
GGAAGGGCCTAACAACCTATCTGTTGTTGATGCTGCCCTGGGGAAACCTA
CCGGGCACATAGATAATCTTCCTTCTGAAAACGAGTGTGTAGGACTTGAA
GATTTTGAGGTTTTGAAGGTTGTTGGCCAAGGTGCTTTTGCAAAAGTATA
CCAGGTGAGGAGGATCGGTACTTTAGAAATTTATGCAATGAAGGTCATGC
GCAAGGACAAGATTATGGAGAAAAATCATGCGGAATACATGAAATCTGAG
AGGAATATACTGACGAAAGTAGATCACCCCTTCATTGTGCAGCTCAGATA
CTCATTTCAAGTAATGTCTTATCTTTATCACACATAAGATGTTTTGTCTT
TTTAACCCTGCACCGGACTATGTGAATTCCATGCACTTTGCTTTGCCTTC
ATGATTCAGTTAATTAGTTAGTGATCTCAAGATTAGTTTGATCATGATAG
CAGATTTCCATTGCCCTACTTATGGAGCTTTGCATATTGTATACAGCAGT
TATATAAATTAATCTGTTCTGCAGACCAAATATAGACTGTACCTTGTGCT
TGATTTTGTCAATGGCGGCCACCTTTTCTTTCAGCTCTATCGCCAAGGCT
TGTTCAGGGAGGATTTGGCACGTATATATACTGCTGAGATTGT
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