CF504676

Overview
NameCF504676
Unique NameCF504676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_STAA8 (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain NCTC 8325) GN=recG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 2 
Query:   14 LALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            LA++++G+M ++ I  LP GR PI T   +  +  Y+ V   M  EL+ G + Y++ P IE SE L  ++   +  E++ Q +     GLLHGK+ +D+KDE +
Sbjct:  426 LAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQ--YDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVM 527
[Close]
BLAST of CF504676 vs. ExPASy Swiss-Prot
Match: RECG_BORBU (ATP-dependent DNA helicase recG OS=Borrelia burgdorferi GN=recG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.940e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 2 
Query:   17 ALALYGDMSLTQITDLPPGRIPIKTYII-EGNEKGYENVYKMMLDELQSGGKVYLVYPGIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDQKDEAL 325
            AL L+GD+ ++ I  LP GR+PI TY+   GNE   + VY+ +  EL  G +VY VYP I  SE+  +L+   +    + + F +Y   +LH K+ SD K+E +
Sbjct:  426 ALTLFGDLEVSFIKTLPKGRLPITTYLARHGNE---DKVYEFLRKELLKGHQVYFVYPLISSSEKF-ELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIM 525
The following BLAST results are available for this feature:
BLAST of CF504676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RECG_STAA82.353e-1235.58ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_BORBU8.940e-1238.46ATP-dependent DNA helicase recG OS=Borrelia burgdo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-165 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504676 ID=CF504676; Name=CF504676; organism=Citrus sinensis; type=EST; length=325bp
TTCGGGCTGCAGGCTTGCTTTGGCATTATATGGGGATATGTCCTTAACAC
AGATAACTGACTTACCTCCAGGAAGGATACCTATTAAGACCTACATCATT
GAAGGAAATGAGAAGGGCTATGAGAATGTGTACAAGATGATGCTTGACGA
ACTGCAATCAGGTGGAAAAGTGTACCTTGTGTATCCTGGCATTGAACAAT
CTGAGCAGTTGCCCCAGCTCCGTGCTGCTGCTTCAGATCTTGAAACTATA
TCTCAAAGATTTCAGGATTACAGCTGCGGGTTGTTGCATGGGAAAATGAA
GAGTGACCAAAAAGATGAGGCTTTA
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