CF509544

Overview
NameCF509544
Unique NameCF509544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length206
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_SALA4 (3-dehydroquinate synthase OS=Salmonella agona (strain SL483) GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELASGLAEVIKYG+I DA+FF W E N+  L+  D  A AY I+R CE KAEVV+ DE+E+GLRA LN
Sbjct:  177 ELASGLAEVIKYGIILDADFFTWLEGNLDALLRLDGPAMAYCIRRCCELKAEVVAADEREAGLRALLN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_SACD2 (3-dehydroquinate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL++G+AEVIKYGLI D EFF W E N+  LMARD  A  YAI+RSC+ KA+VV+ DE ESG+RA LN
Sbjct:  176 ELSAGMAEVIKYGLIADYEFFCWLESNVKALMARDVDALEYAIERSCQIKADVVAQDETESGIRAILN 243          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_PHOPR (3-dehydroquinate synthase OS=Photobacterium profundum GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E ASG+AEVIKYG+I D EFF W EQN+ KL A D  A  YAI R C+ KA+VV+ DEKESG+RA LN
Sbjct:  178 EFASGMAEVIKYGIIADYEFFVWLEQNIEKLQALDNEALCYAIGRCCQIKADVVASDEKESGVRALLN 245          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BORPE (3-dehydroquinate synthase OS=Bordetella pertussis GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E+++GLAEVIKYGLI DA F++W E N+  L A +P A AYAI+RSCE KA+VV  DE+ESGLRA LN
Sbjct:  176 EVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRAILN 243          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BORPA (3-dehydroquinate synthase OS=Bordetella parapertussis GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E+++GLAEVIKYGLI DA F++W E N+  L A +P A AYAI+RSCE KA+VV  DE+ESGLRA LN
Sbjct:  176 EVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRAILN 243          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BORBR (3-dehydroquinate synthase OS=Bordetella bronchiseptica GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E+++GLAEVIKYGLI DA F++W E N+  L A +P A AYAI+RSCE KA+VV  DE+ESGLRA LN
Sbjct:  176 EVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRAILN 243          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_AZOSE (3-dehydroquinate synthase OS=Azoarcus sp. (strain EbN1) GN=aroB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL +GLAEVIKYGLIRD   F+W E ++ +++AR+P A A+AI+RSC NKAEVV+ DE E G RA LN
Sbjct:  177 ELKAGLAEVIKYGLIRDPALFDWLEAHIERVLAREPEALAFAIERSCANKAEVVAADETEQGERALLN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_SERP5 (3-dehydroquinate synthase OS=Serratia proteamaculans (strain 568) GN=aroB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            EL+SGLAEVIKYG+I D +FF W E N+  L+A D  A AY I+R CE KAEVV+ DE+ESGLRA LN
Sbjct:  177 ELSSGLAEVIKYGIILDHDFFVWLENNIDALVALDMQALAYCIRRCCELKAEVVAADERESGLRALLN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURCJ (3-dehydroquinate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=aroB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AEVIK G I DAEFF+W E N+  L  R+P+A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEVIKTGAIADAEFFDWIEANVEALNRREPAALAHAVKRSCEIKASVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_VIBHB (3-dehydroquinate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=aroB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E A+G+AEVIKYG+I D  FF+W E+N+ +L A D  A  YAI R CE KAEVV+ DEKESG+RA LN
Sbjct:  181 EFAAGIAEVIKYGIIYDGAFFDWLEENLDRLYALDEEALTYAIARCCEIKAEVVAQDEKESGIRALLN 248          
The following BLAST results are available for this feature:
BLAST of CF509544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
AROB_SALA41.079e-1764.713-dehydroquinate synthase OS=Salmonella agona (str... [more]
AROB_SACD21.079e-1764.713-dehydroquinate synthase OS=Saccharophagus degrad... [more]
AROB_PHOPR1.079e-1764.713-dehydroquinate synthase OS=Photobacterium profun... [more]
AROB_BORPE1.079e-1764.713-dehydroquinate synthase OS=Bordetella pertussis ... [more]
AROB_BORPA1.079e-1764.713-dehydroquinate synthase OS=Bordetella parapertus... [more]
AROB_BORBR1.079e-1764.713-dehydroquinate synthase OS=Bordetella bronchisep... [more]
AROB_AZOSE1.079e-1761.763-dehydroquinate synthase OS=Azoarcus sp. (strain ... [more]
AROB_SERP51.409e-1764.713-dehydroquinate synthase OS=Serratia proteamacula... [more]
AROB_BURCJ1.409e-1763.243-dehydroquinate synthase OS=Burkholderia cepacia ... [more]
AROB_VIBHB1.840e-1761.763-dehydroquinate synthase OS=Vibrio harveyi (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509544 ID=CF509544; Name=CF509544; organism=Citrus sinensis; type=EST; length=206bp
GGGAACTGGCATCAGGACTTGCAGAGGTTATCAAGTATGGGCTCATCAGG
GATGCAGAATTTTTTGAATGGCAGGAGCAAAATATGCATAAATTGATGGC
AAGGGATCCAAGTGCATTTGCTTATGCTATAAAGCGATCTTGTGAAAATA
AGGCTGAGGTTGTGTCCTTGGATGAGAAGGAGAGTGGACTAAGAGCAACA
CTAAAC
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