CF509544

Overview
NameCF509544
Unique NameCF509544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length206
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURCM (3-dehydroquinate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.130e-17
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AEVIK G I DA FF+W E N+  L  R+P+A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEVIKTGAIADAAFFDWIEANVDALNRREPAALAHAVKRSCEIKASVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURCH (3-dehydroquinate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.130e-17
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AEVIK G I DA FF+W E N+  L  R+P+A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEVIKTGAIADAGFFDWIEANVEALNRREPAALAHAVKRSCEIKASVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURCC (3-dehydroquinate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.130e-17
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AEVIK G I DA FF+W E N+  L  R+P+A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEVIKTGAIADAGFFDWIEANVEALNRREPAALAHAVKRSCEIKASVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURCA (3-dehydroquinate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.130e-17
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AEVIK G I DA FF+W E N+  L  R+P+A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEVIKTGAIADAGFFDWIEANVEALNRREPAALAHAVKRSCEIKASVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_VIBVY (3-dehydroquinate synthase OS=Vibrio vulnificus (strain YJ016) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E A+G+AEVIKYG+I DAEFF W ++++  L + D  A  YAI R CE KAEVV+ DEKESG+RA LN
Sbjct:  182 EFAAGIAEVIKYGIIYDAEFFTWLDEHLDALYSLDEQALTYAIARCCEIKAEVVAQDEKESGIRALLN 249          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_VIBVU (3-dehydroquinate synthase OS=Vibrio vulnificus GN=aroB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E A+G+AEVIKYG+I DAEFF W ++++  L + D  A  YAI R CE KAEVV+ DEKESG+RA LN
Sbjct:  177 EFAAGIAEVIKYGIIYDAEFFTWLDEHLDALYSLDEQALTYAIARCCEIKAEVVAQDEKESGIRALLN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_VIBPA (3-dehydroquinate synthase OS=Vibrio parahaemolyticus GN=aroB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            E A+G+AEVIKYG+I D  FF+W E+N+ +L   D  A  YAI R C+ KAEVV+ DEKESG+RA LN
Sbjct:  181 EFAAGIAEVIKYGIIYDGAFFDWLEENLDRLYTLDEDALTYAIARCCQIKAEVVAQDEKESGIRALLN 248          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURVG (3-dehydroquinate synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AEVIK G I DAEFF+W E N+  L  R+P+   +A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGIAEVIKTGAIADAEFFDWIEANVDALNRREPAVLVHAVKRSCEIKASVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURPS (3-dehydroquinate synthase OS=Burkholderia pseudomallei GN=aroB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AE++K G I DA FF+W E N+  L  RDP A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEIVKTGAIADAAFFDWIEANVGALTRRDPDALAHAVKRSCEIKAGVVAADEREGGLRAILN 244          
BLAST of CF509544 vs. ExPASy Swiss-Prot
Match: AROB_BURP6 (3-dehydroquinate synthase OS=Burkholderia pseudomallei (strain 668) GN=aroB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.192e-16
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 ELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPSAFAYAIKRSCENKAEVVSLDEKESGLRATLN 206
            ELA+G+AE++K G I DA FF+W E N+  L  RDP A A+A+KRSCE KA VV+ DE+E GLRA LN
Sbjct:  177 ELAAGVAEIVKTGAIADAAFFDWIEANVGALTRRDPDALAHAVKRSCEIKAGVVAADEREGGLRAILN 244          
The following BLAST results are available for this feature:
BLAST of CF509544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
AROB_BURCM9.130e-1761.763-dehydroquinate synthase OS=Burkholderia ambifari... [more]
AROB_BURCH9.130e-1761.763-dehydroquinate synthase OS=Burkholderia cenocepa... [more]
AROB_BURCC9.130e-1761.763-dehydroquinate synthase OS=Burkholderia cenocepa... [more]
AROB_BURCA9.130e-1761.763-dehydroquinate synthase OS=Burkholderia cenocepa... [more]
AROB_VIBVY1.192e-1660.293-dehydroquinate synthase OS=Vibrio vulnificus (st... [more]
AROB_VIBVU1.192e-1660.293-dehydroquinate synthase OS=Vibrio vulnificus GN=... [more]
AROB_VIBPA1.192e-1658.823-dehydroquinate synthase OS=Vibrio parahaemolytic... [more]
AROB_BURVG1.192e-1660.293-dehydroquinate synthase OS=Burkholderia vietnami... [more]
AROB_BURPS1.192e-1660.293-dehydroquinate synthase OS=Burkholderia pseudoma... [more]
AROB_BURP61.192e-1660.293-dehydroquinate synthase OS=Burkholderia pseudoma... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-052 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509544 ID=CF509544; Name=CF509544; organism=Citrus sinensis; type=EST; length=206bp
GGGAACTGGCATCAGGACTTGCAGAGGTTATCAAGTATGGGCTCATCAGG
GATGCAGAATTTTTTGAATGGCAGGAGCAAAATATGCATAAATTGATGGC
AAGGGATCCAAGTGCATTTGCTTATGCTATAAAGCGATCTTGTGAAAATA
AGGCTGAGGTTGTGTCCTTGGATGAGAAGGAGAGTGGACTAAGAGCAACA
CTAAAC
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