CF509570

Overview
NameCF509570
Unique NameCF509570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.502e-25
Identity = 73/173 (42.20%), Postives = 90/173 (52.02%), Query Frame = 1
Query:   25 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  Y      + +  T+  +E + I +AE +R         +  DP             YPGG  FDPLG+ S  P K +EL+ KEIKNGRLAMLA
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLA 201          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.621e-24
Identity = 68/173 (39.31%), Postives = 86/173 (49.71%), Query Frame = 1
Query:   25 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE L     +    W     G+  Y           T+  +E + I + E +R                 + +       YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------SMEKDSEKKKYPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLA 202          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.047e-24
Identity = 68/168 (40.48%), Postives = 90/168 (53.57%), Query Frame = 1
Query:   43 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    +     L    D+ YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM +
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFS 224          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.051e-23
Identity = 67/166 (40.36%), Postives = 89/166 (53.61%), Query Frame = 1
Query:   46 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     A ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM +
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFS 223          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.793e-23
Identity = 73/181 (40.33%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   10 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I        TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM +
Sbjct:   61 PDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFS 232          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 66/166 (39.76%), Postives = 89/166 (53.61%), Query Frame = 1
Query:   46 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     + ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM +
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFS 195          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 64/165 (38.79%), Postives = 86/165 (52.12%), Query Frame = 1
Query:   46 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG   +      +     L   + I   WA     + ++  G +    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM +
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWA-----SQVVLMGLIEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFS 223          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 66/166 (39.76%), Postives = 88/166 (53.01%), Query Frame = 1
Query:   46 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM +
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAI-WA-----CQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFS 223          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 70/180 (38.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   10 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM +
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFVEGYRVGGGPLGEGLDPIYPGGA-FDPLGL-ADDPDAFAELKVKEIKNGRLAMFS 223          
BLAST of CF509570 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23
Identity = 72/180 (40.00%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   13 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 519
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    +         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM +
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRVAGGPLGEVEDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFS 223          
The following BLAST results are available for this feature:
BLAST of CF509570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB121_HORVU2.502e-2542.20Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.621e-2439.31Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_SINAL8.047e-2440.48Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_PETSP1.051e-2340.36Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2B_PINSY1.793e-2340.33Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_SOLLC2.341e-2339.76Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_TOBAC2.341e-2338.79Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC3.994e-2339.76Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_GOSHI3.994e-2338.89Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU5.216e-2340.00Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-078 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509570 ID=CF509570; Name=CF509570; organism=Citrus sinensis; type=EST; length=519bp
GCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCTCCTGA
ATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTC
TTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAATTGTG
CACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCGGAATT
GTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGCTGGGG
AGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGATGATA
TTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAGCCAGG
CTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGGCACCG
ATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTTGGCTGGGGATCC
GGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAGGAGATCAAGAATGG
AAGATTGGCTATGTTGGCT
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