CF509636 | Citrus Genome Database

Overview


Name	CF509636
Unique Name	CF509636
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	441

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.786e-44
Identity = 85/112 (75.89%), Postives = 87/112 (77.68%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI PKDI L
Sbjct:   16 APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHL 127

HSP 2 Score: 37.3502 bits (85), Expect = 1.786e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.786e-44
Identity = 83/112 (74.11%), Postives = 88/112 (78.57%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LA+KAARK+APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QL
Sbjct:   16 APRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 1.786e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.328e-44
Identity = 87/112 (77.68%), Postives = 89/112 (79.46%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAI AKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQL 126

HSP 2 Score: 37.3502 bits (85), Expect = 2.328e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.033e-44
Identity = 83/112 (74.11%), Postives = 89/112 (79.46%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KDIQL
Sbjct:   16 APRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 3.033e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.953e-44
Identity = 85/112 (75.89%), Postives = 89/112 (79.46%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A   ++ATKA RK+AP  GGVKKPHRFRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 126

HSP 2 Score: 37.3502 bits (85), Expect = 3.953e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 5.152e-44
Identity = 85/112 (75.89%), Postives = 86/112 (76.79%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKA    A ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QL
Sbjct:   16 APRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.152e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 6.714e-44
Identity = 84/112 (75.00%), Postives = 88/112 (78.57%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A   +LATKAARKSA  TG VKK HRFRPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QL
Sbjct:   16 APRKALATKAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 6.714e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 6.714e-44
Identity = 82/112 (73.21%), Postives = 89/112 (79.46%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KD+QL
Sbjct:   16 APRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 6.714e-44
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H3_TRIRE (Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.486e-43
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQL
Sbjct:   16 APRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 1.486e-43
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

[Close]

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.486e-43
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LA+KAARKSAP+TGGVKKPHR++PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRF                  LFEDTNLCAIHAKRVTI  KDIQL
Sbjct:   16 APRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 1.486e-43
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

The following BLAST results are available for this feature:

BLAST of CF509636 vs. ExPASy Swiss-Prot

BLAST of CF509636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190


Match Name	E-value	Identity	Description
H3_MORAP	1.786e-44	75.89	Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3	[more]
H31_SCHPO	1.786e-44	74.11	Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=...	[more]
H33_CHLRE	2.328e-44	77.68	Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=...	[more]
H31_LODEL	3.033e-44	74.11	Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=...	[more]
H3_MASBA	3.953e-44	75.89	Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1	[more]
H32_CICIN	5.152e-44	75.89	Histone H3.2 OS=Cichorium intybus PE=2 SV=3	[more]
H33L2_CAEEL	6.714e-44	75.00	Histone H3.3-like type 2 OS=Caenorhabditis elegans...	[more]
H31_CANAL	6.714e-44	73.21	Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3...	[more]
H3_TRIRE	1.486e-43	73.21	Histone H3 OS=Trichoderma reesei GN=HHT1 PE=3 SV=2	[more]
H3_PHANO	1.486e-43	73.21	Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_125000-144 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509636 ID=CF509636; Name=CF509636; organism=Citrus sinensis; type=EST; length=441bp
ATTTTGTTTCACTTTCTCAAGAAACAAACACTCATTTTCGTCTTCTACTC
TCACAAATGGCCCGCACAAAGCAAACCGCTAGGAAATCAACCGGAGGAAA
GGCGCCACTGCAAGCAGCCTTGCAACAAAGGCGGCTCGTAAGTCGGCTCC
GGCGACGGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACCGTTG
CTCTGAGAGAGATCAGGAAGTACCAGAAGAGCACTGAGCTTTTGATCAGG
AAGCTTCCGTTCCAAAGACTCGTTAGGGAAATCGCTCAGGACTTTAAGAC
CGATCTGAGGTTCCAAAGCAGCGCCGTCGCGGCTCTTCAAGAAGCTGCCG
AGGCTTATCTAGTCGGTCTCTTTGAAGATACTAACCTCTGCGCCATTCAT
GCCAAGAGAGTTACTATTATGCCCAAGGATATTCAGCTCGC