CF509642 | Citrus Genome Database

Overview


Name	CF509642
Unique Name	CF509642
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	433

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SHIB3 (NAD-dependent malic enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sfcA PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.674e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R    EY E +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRNPRIIDDEYYEFVDEFIQAVKQRWPDVLL 243

HSP 2 Score: 33.4982 bits (75), Expect = 2.674e-15
Identity = 14/29 (48.28%), Postives = 21/29 (72.41%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE+I  +  ++
Sbjct:  293 LSEKKIVFLGAGSAGCGIAEMIIAQTQRE 321

HSP 3 Score: 33.113 bits (74), Expect = 2.674e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLNRYRNEICSFNDDIQ 272

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALTY (NAD-dependent malic enzyme OS=Salmonella typhimurium GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALTI (NAD-dependent malic enzyme OS=Salmonella typhi GN=sfcA PE=3 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALSV (NAD-dependent malic enzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALPB (NAD-dependent malic enzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALPA (NAD-dependent malic enzyme OS=Salmonella paratyphi A GN=sfcA PE=3 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALNS (NAD-dependent malic enzyme OS=Salmonella newport (strain SL254) GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALHS (NAD-dependent malic enzyme OS=Salmonella heidelberg (strain SL476) GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALG2 (NAD-dependent malic enzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

[Close]

BLAST of CF509642 vs. ExPASy Swiss-Prot
Match: MAO1_SALEP (NAD-dependent malic enzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=sfcA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.791e-15
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1

Query:    1 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVL 153
            + +DVGTNN+QLL D  Y+G R  R T  EY   +DEF+ AVKQ + + +L
Sbjct:  193 VVLDVGTNNQQLLNDPLYMGWRHPRITDDEYYAFVDEFIQAVKQRWPDILL 243

HSP 2 Score: 33.4982 bits (75), Expect = 5.791e-15
Identity = 16/28 (57.14%), Postives = 17/28 (60.71%), Query Frame = 3

Query:  165 FEDFANHNAFELLAKYGTTHLVFNDDIQ 248
            FEDFA  NA  LL +Y      FNDDIQ
Sbjct:  245 FEDFAQKNAMPLLTRYRDEICSFNDDIQ 272

HSP 3 Score: 32.3426 bits (72), Expect = 5.791e-15
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:  302 LAEHRFLFLGAGEAGTGIAELIALEISKQ 388
            L+E + +FLGAG AG GIAE I  +  ++
Sbjct:  293 LSEQKIVFLGAGSAGCGIAEQIIAQTQRE 321

The following BLAST results are available for this feature:

BLAST of CF509642 vs. ExPASy Swiss-Prot

BLAST of CF509642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133


Match Name	E-value	Identity	Description
MAO1_SHIB3	2.674e-15	49.02	NAD-dependent malic enzyme OS=Shigella boydii sero...	[more]
MAO1_SALTY	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella typhimuri...	[more]
MAO1_SALTI	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella typhi GN=...	[more]
MAO1_SALSV	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella schwarzen...	[more]
MAO1_SALPB	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella paratyphi...	[more]
MAO1_SALPA	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella paratyphi...	[more]
MAO1_SALNS	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella newport (...	[more]
MAO1_SALHS	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella heidelber...	[more]
MAO1_SALG2	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella gallinaru...	[more]
MAO1_SALEP	5.791e-15	49.02	NAD-dependent malic enzyme OS=Salmonella enteritid...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_125000-150 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509642 ID=CF509642; Name=CF509642; organism=Citrus sinensis; type=EST; length=433bp
ATAACCGTTGATGTGGGTACAAACAATGAGCAATTGTTGAAGGATGAATT
CTACATTGGTCTACGACAGAGGAGGGCAACCGGACAGGAATATGCTGAAC
TTCTAGATGAATTCATGAGTGCTGTCAAGCAAAATTATGGAGAAAAAGTT
CTTATACAGGTTAGTTTGAGGATTTCGCAAACCACAATGCTTTTGAGTTG
CTTGCAAAATATGGCACAACTCATCTTGTCTTCAATGATGATATACAGCG
TCTGTTGTTCTTGCTGGGGTAGTTGCAGCACTGAAGTTGATTGGTGGCAC
ACTGGCCGAGCATAGATTTTTGTTTCTTGGAGCTGGGGAGGCTGGGACTG
GTATAGCTGAACTTATTGCGCTTGAGATATCAAAGCAGACTAAAGCTCCT
GTGGAAGAGACCCCGGAAGAAGATATGTCTTGT