CF509643

Overview
NameCF509643
Unique NameCF509643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_ACACA (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Acanthamoeba castellanii GN=NAD11 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.853e-35
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 3
Query:    6 LMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVML------QAKPEEIVGIAGRLSDAESMMALKDFL 443
            LM SELSGNVID+CPVGALTSKPFAF +R WELK   +IDV D++ SNIR+D RG ++MRILPR+N ++NE+WI+DK RF YD  + QRL DPM++   G F  + W+ A+  + +          +    + G  G   D E++   K FL
Sbjct:  185 LMRSELSGNVIDLCPVGALTSKPFAFTSRPWELKSYNSIDVLDSLHSNIRVDIRGTKIMRILPRVNSELNEDWITDKIRFSYDSFRRQRLYDPMVK-ISGSFLKIGWKKAMLFIKKFFCNFLGFNHSSFIPLRGYIGDYLDLETIYTFKKFL 335          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_DICCI (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium citrinum GN=nad11 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 7.283e-26
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 3
Query:    6 LMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK---SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK 371
            ++ SELSGN+ID+CPVGALTS  +A+K R WELK  + ID+ D V + I    +G E+ RILPR+N+ +NEEWI+DK RF Y+  K     R + P  +    +F  ++W+ AL +V +V+L  K
Sbjct:  191 IIESELSGNIIDLCPVGALTSAVYAYKGRPWELKNIKGIDIFDTVLTPINYQVKGGEIFRILPRINDRLNEEWITDKVRFHYESYKIIEKMRKDTPSYKIQANKFIELSWKTALKMVFKVLLNKK 315          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NDUS1_DICDI (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium discoideum GN=nad11 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.614e-25
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 3
Query:    6 LMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK---SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK 371
            ++ SELSGN+ID+CPVGALTS  +A+K R WELK  + ID+ D + + I    +G E+ RILPR+N+ INEEWI+DK RF Y+  K     R   P  +    +F  + W+ AL +V +V+L  K
Sbjct:  191 MIESELSGNIIDLCPVGALTSAVYAYKGRPWELKNIKGIDIFDTLLTPINYQVKGGEIFRILPRINDRINEEWITDKVRFHYESYKIIEKIRKETPSYKIQANKFIELTWKTALKMVFKVLLNKK 315          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NQO3_THET8 (NADH-quinone oxidoreductase subunit 3 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 8.623e-19
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:    9 MTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEI 383
            + S  SGN+ DICPVGAL      F+ARNWE++ T T      VG  I  D+R  E++RI  R   ++NE WI D  RF ++     RL  P++R  +GR     W +A   + E + +A+ EE+
Sbjct:  218 LPSGFSGNITDICPVGALLDLTARFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVR-KEGRLVEATWEEAFLALKEGLKEARGEEV 341          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NUOG_STRCO (NADH-quinone oxidoreductase subunit G OS=Streptomyces coelicolor GN=nuoG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 3
Query:   15 SELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYD-GLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLS 407
            S  SGN I ICPVGALTS  + F++R ++L  + ++    + G   R D R  +VMR L     ++NEEWI DK RF +    +  RL  P++R A+G  +  +W +AL + A+ +L ++    V   GRL+
Sbjct:  209 SYFSGNTIQICPVGALTSAAYRFRSRPFDLISSPSVCEHCSGGCATRTDHRRGKVMRRLAANEPEVNEEWICDKGRFGFRYAQQRDRLTTPLVRNAEGELEPASWPEALQIAAQGLLASRGRTGVLTGGRLT 340          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NUOG2_RHIME (NADH-quinone oxidoreductase subunit G 2 OS=Rhizobium meliloti GN=nuoG2 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 3
Query:    6 LMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQ-RLNDPMIRGADGRFKAVNWRDA 335
            L + +  GN +++CPVGAL S P+ +KAR W+L  T+TI      G  + + +R  E MR+       +N E +  + RF  D ++S+ R+  PMIR  DG    V+W +A
Sbjct:  185 LASCDQCGNCVEVCPVGALMSFPYRYKARPWDLAETDTICPHCGTGCQLTVGARKGEFMRVRSDWEHGVNRETLCVRGRFGLDFIESRDRIKRPMIR-RDGTLTPVSWEEA 294          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NUOG_MYCTU (NADH-quinone oxidoreductase subunit G OS=Mycobacterium tuberculosis GN=nuoG PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.206e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   15 SELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYD-GLKSQRLNDPMIR-GAD--GRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLS 407
            S  SGN + ICPVGALT   + F+AR ++L  + ++    A G   R D R  +V+R L   + ++NEEW  DK R+ +    +   +  P+IR G D  G     +W  A+AV A+ +  A+    V + GR++
Sbjct:  204 SYFSGNTVQICPVGALTGTAYRFRARPFDLVSSPSVCEHCASGCAQRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDVITTPLIRDGGDPKGALVPTSWSHAMAVAAQGLAAARGRTGVLVGGRVT 338          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NUOG_MYCBO (NADH-quinone oxidoreductase subunit G OS=Mycobacterium bovis GN=nuoG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.206e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   15 SELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYD-GLKSQRLNDPMIR-GAD--GRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLS 407
            S  SGN + ICPVGALT   + F+AR ++L  + ++    A G   R D R  +V+R L   + ++NEEW  DK R+ +    +   +  P+IR G D  G     +W  A+AV A+ +  A+    V + GR++
Sbjct:  204 SYFSGNTVQICPVGALTGTAYRFRARPFDLVSSPSVCEHCASGCAQRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDVITTPLIRDGGDPKGALVPTSWSHAMAVAAQGLAAARGRTGVLVGGRVT 338          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NUOG_SHIFL (NADH-quinone oxidoreductase subunit G OS=Shigella flexneri GN=nuoG PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 3
Query:    9 MTSELSGNVIDICPVGALTSKPFAFK-ARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYD--GLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            + SE SGN+++ICP G  T K  + +  R W+++   +I    ++G NI    R  E+ RI  R N  +N  ++ D+ RF Y    LK +       RG D  F  +N   A+   A+++ Q+K  +++GI    +  ES  AL++ +
Sbjct:  189 LESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDD--FITLNAEQAMQGAADILRQSK--KVIGIGSPRASVESNFALRELV 332          
BLAST of CF509643 vs. ExPASy Swiss-Prot
Match: NUOG_ECOLI (NADH-quinone oxidoreductase subunit G OS=Escherichia coli (strain K12) GN=nuoG PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 3
Query:    9 MTSELSGNVIDICPVGALTSKPFAFK-ARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYD--GLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFL 443
            + SE SGN+++ICP G  T K  + +  R W+++   +I    ++G NI    R  E+ RI  R N  +N  ++ D+ RF Y    LK +       RG D  F  +N   A+   A+++ Q+K  +++GI    +  ES  AL++ +
Sbjct:  189 LESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDD--FITLNAEQAMQGAADILRQSK--KVIGIGSPRASVESNFALRELV 332          
The following BLAST results are available for this feature:
BLAST of CF509643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NDUS1_ACACA3.853e-3548.68NADH-ubiquinone oxidoreductase 75 kDa subunit OS=A... [more]
NDUS1_DICCI7.283e-2645.60NADH-ubiquinone oxidoreductase 75 kDa subunit OS=D... [more]
NDUS1_DICDI3.614e-2545.60NADH-ubiquinone oxidoreductase 75 kDa subunit OS=D... [more]
NQO3_THET88.623e-1938.40NADH-quinone oxidoreductase subunit 3 OS=Thermus t... [more]
NUOG_STRCO2.124e-1737.12NADH-quinone oxidoreductase subunit G OS=Streptomy... [more]
NUOG2_RHIME5.413e-1336.04NADH-quinone oxidoreductase subunit G 2 OS=Rhizobi... [more]
NUOG_MYCTU1.206e-1234.07NADH-quinone oxidoreductase subunit G OS=Mycobacte... [more]
NUOG_MYCBO1.206e-1234.07NADH-quinone oxidoreductase subunit G OS=Mycobacte... [more]
NUOG_SHIFL2.970e-1130.41NADH-quinone oxidoreductase subunit G OS=Shigella ... [more]
NUOG_ECOLI2.970e-1130.41NADH-quinone oxidoreductase subunit G OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-151 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509643 ID=CF509643; Name=CF509643; organism=Citrus sinensis; type=EST; length=445bp
AAAAACTTATGACAAGTGAACTTTCTGGAAATGTGATAGATATTTGTCCT
GTGGGAGCCCTTACTTCAAAACCTTTCGCATTCAAAGCCCGAAACTGGGA
GTTAAAAGGAACAGAGACCATTGATGTAACTGATGCAGTCGGATCTAACA
TTCGAATAGACAGCAGGGGTCCAGAGGTCATGCGCATCCTCCCGCGGTTA
AATGAGGATATAAACGAAGAATGGATCTCAGACAAGACCCGTTTTTGTTA
TGATGGTTTGAAGAGTCAGAGGCTAAATGATCCAATGATTCGTGGTGCTG
ACGGGCGCTTTAAGGCTGTAAACTGGAGAGATGCCTTGGCTGTGGTTGCT
GAGGTTATGCTTCAGGCTAAACCAGAGGAAATTGTGGGGATAGCTGGTCG
GTTGTCTGATGCAGAATCCATGATGGCACTAAAAGACTTCTTAAA
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