CF509677

Overview
NameCF509677
Unique NameCF509677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 60/140 (42.86%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    4 STMSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV 423
            S  +  S  GYDRHITIFSPEG+       F++        L V  +                    VS+IF  S+ T+     G   DAR    +A+ EAAEFR+KYGY+MP DVLAK +A+ SQ+YTQ AYMRPLGV+
Sbjct:    2 SGAAAASAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISR-TIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVI 140          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1
Query:   10 MSRGSGGGYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQ-VSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 417
            MSRGS  G+DRHITIFSPEG+       F++      L  +  +               S  +   V+ ++  SQS + C   GM  DA+  + +A+ EAA +++K GY+MP ++LAK +AD +Q YTQ+A MR LG
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAI-NSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQS-VGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLG 135          
BLAST of CF509677 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.566e-14
Identity = 51/130 (39.23%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   31 GYDRHITIFSPEGQSLSSRVCFQSC*GMLGLPLLVFEERIQXXXXXXXXXXTSFWIIQVSHIFSQSQSTLDCWQPGMTADARTLVHQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 420
            G+DR IT+FSPEG+       F++        + V  +                    V H+F  ++  + C   G  ADAR  V +AR EAAEF +K GY MP DVLAK +A+ +QV TQ A MRPLGV
Sbjct:    6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKG-IGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGV 134          
The following BLAST results are available for this feature:
BLAST of CF509677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PSA6_YEAST2.758e-1942.86Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA6_CAEEL4.868e-1637.96Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA6_SCHPO1.566e-1439.23Probable proteasome subunit alpha type-6 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-185 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509677 ID=CF509677; Name=CF509677; organism=Citrus sinensis; type=EST; length=430bp
TAATCAACAATGAGTAGAGGAAGTGGAGGAGGATACGATCGTCATATTAC
AATTTTTTCGCCTGAGGGTCAGTCTCTTTCAAGTCGAGTATGCTTTCAAA
GCTGTTAAGGCATGCTGGGGTTACCTCTATTGGTGTTCGAGGAAAGGATT
CAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCAT
ACAAGTGTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGC
AACCTGGAATGACAGCTGATGCAAGGACATTGGTTCATCAGGCAAGATAT
GAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGT
GTTAGCCAAATGGATTGCAGACAAATCACAAGTATATACTCAACATGCTT
ATATGAGACCACTTGGTGTAGTTGCTATGG
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